Evidence map›Paper›PMID 41099693›Full record

ArticleNucleic acids research2025

Decoding nucleoside supplementation: how thymidine outperforms ribonucleosides in accelerating mammalian replication forks.

Praveen Pandey, Kiminori Kurashima, Göran Bylund, Erik Johansson, Tomomi Tsubouchi, Andrei Chabes

Erratum issuedAbstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Praveen PandeyDepartment of Medical Biochemistry and Biophysics, Umeå University, Umeå SE-901 87, Sweden.
Kiminori KurashimaLaboratory of Stem Cell Biology, National Institute for Basic Biology, National Institutes of Natural Sciences, 38 Nishigonaka, Myodaiji, Okazaki Aichi 444-8585, Japan.
Göran BylundDepartment of Medical Biochemistry and Biophysics, Umeå University, Umeå SE-901 87, Sweden.
Erik JohanssonDepartment of Medical Biochemistry and Biophysics, Umeå University, Umeå SE-901 87, Sweden.ORCID 0000-0002-8526-6224
Tomomi TsubouchiLaboratory of Stem Cell Biology, National Institute for Basic Biology, National Institutes of Natural Sciences, 38 Nishigonaka, Myodaiji, Okazaki Aichi 444-8585, Japan.ORCID 0000-0001-9960-3888
Andrei ChabesDepartment of Medical Biochemistry and Biophysics, Umeå University, Umeå SE-901 87, Sweden.ORCID 0000-0003-1708-8259

Funding

FOREST JPMJFR2008JSTSwedish Cancer Society 22 2377 PjSwedish Cancer Society 23 2999 PjSwedish Research Council 2021-01104Swedish Research Council 2022-00675TAKEDA Life Science ResearchVetenskapsrådet
6 · The paper itself

Abstract

Disruptions in deoxynucleoside triphosphate (dNTP) supply impair DNA replication and lead to genomic instability. While exogenous ribonucleosides (rNuc) have been suggested to alleviate replication stress by increasing dNTP levels, their precise metabolic effects remain unclear. Here, we show that rNuc supplementation primarily elevates CTP and UTP levels, with only modest increases in dCTP, and has minimal impact on replication fork speed across multiple mammalian cell lines. In contrast, thymidine (dThd), either alone or in combination with rNuc-as in EmbryoMax Nucleosides-significantly increases dTTP and dGTP levels, leading to accelerated replication fork progression. Notably, dThd, rather than rNuc, drives fork acceleration and counteracts fork slowdown caused by elevated dUTP, consistent with primer extension assays showing that dUTP transiently inhibits Pol ϵ-mediated DNA synthesis at template adenines. These results clarify the distinct roles of nucleosides in nucleotide metabolism, providing a mechanistic basis for how dThd promotes fork progression and preserves genomic stability.

Indexed as

DNA ReplicationRibonucleosidesThymidineAnimalsCell LineDeoxyribonucleotidesGenomic InstabilityHumansDeoxyribonucleotidesRibonucleosidesThymidine

Identifiers

PMID41099693
PMCPMC12526065

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.