Evidence map›Paper›PMID 41099612›Full record

ArticleProtein science : a publication of the Protein Society2025

Structural mechanisms for cold-adapted activity of phosphoenolpyruvate carboxykinase.

Matthew J McLeod, Shauhin Yazdani, Sarah A E Barwell, Todd Holyoak

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Structural mechanisms for cold-adapted activity of phosphoenolpyruvate carboxykinase.Protein science : a publication of the Protein Society · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Matthew J McLeodDepartment of Biology, University of Waterloo, Waterloo, Ontario, Canada.ORCID 0000-0001-5540-916X
Shauhin YazdaniDepartment of Biology, University of Waterloo, Waterloo, Ontario, Canada.ORCID 0000-0002-1400-6687
Sarah A E BarwellDepartment of Biology, University of Waterloo, Waterloo, Ontario, Canada.ORCID 0000-0002-5703-5525
Todd HolyoakDepartment of Biology, University of Waterloo, Waterloo, Ontario, Canada.ORCID 0000-0002-7329-1115

Funding

Training and OutreachP30GM124166 · NIGMS · CORNELL UNIVERSITY · PI RICHARD A. CERIONE · 2019 to 2026
$28.3M
Natural Sciences and Engineering Research Council of CanadaNIGMS NIH HHS P30 GM124166
6 · The paper itself

Abstract

Temperature is a critical factor in enzyme function, as most enzymes are thermally activated. Across Earth's diverse environments (-20 to 120°C), enzymes have evolved to function optimally at their organism's growth temperature. Thermophilic enzymes must resist denaturation, while psychrophilic enzymes must maintain activity with limited thermal energy. Although principles underlying thermostability are well established, the mechanisms governing kinetic adaptation to temperature remain less understood. To investigate this, we characterized the kinetics and determined a comprehensive series of X-ray crystal structures of a psychrophilic, GTP-dependent phosphoenolpyruvate carboxykinase (PEPCK) bound to substrates and non-reactive mimics of the reaction coordinate. These structures were compared to those of a mesophilic PEPCK. PEPCK is a dynamic enzyme requiring substantial conformational changes during catalysis, particularly ordering of the active site Ω-loop lid. The psychrophilic enzyme exhibited a reduced catalytic efficiency (k

Indexed as

Phosphoenolpyruvate Carboxykinase (GTP)Catalytic DomainCold TemperatureCrystallography, X-RayEnzyme StabilityKineticsModels, MolecularProtein ConformationPhosphoenolpyruvate Carboxykinase (GTP)enzyme structure‐functionomega loopsphosphoenolpyruvate carboxykinasepsycrophillic enzymesthermal adaptation

Identifiers

PMID41099612
PMCPMC12529880

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.