Evidence map›Paper›PMID 41096646›Full record

ArticleInternational journal of molecular sciences2025

Integrative Transcriptomic and Network-Based Analysis of Neuromuscular Diseases.

Federico García-Criado, Lucia Hurtado-García, Elena Rojano, Álvaro Esteban-Martos, Jesús Pérez-García, Pedro Seoane, Juan A G Ranea

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Federico García-CriadoDepartment of Molecular Biology and Biochemistry, Faculty of Sciences, University of Malaga, Bulevar Louis Pasteur, 31, 29010 Malaga, Spain.ORCID 0000-0002-5123-8348
Lucia Hurtado-GarcíaDepartment of Molecular Biology and Biochemistry, Faculty of Sciences, University of Malaga, Bulevar Louis Pasteur, 31, 29010 Malaga, Spain.ORCID 0009-0004-9059-3782
Elena RojanoDepartment of Molecular Biology and Biochemistry, Faculty of Sciences, University of Malaga, Bulevar Louis Pasteur, 31, 29010 Malaga, Spain.ORCID 0000-0002-2678-710X
Álvaro Esteban-MartosDepartment of Molecular Biology and Biochemistry, Faculty of Sciences, University of Malaga, Bulevar Louis Pasteur, 31, 29010 Malaga, Spain.ORCID 0000-0001-9791-7779
Jesús Pérez-GarcíaDepartment of Molecular Biology and Biochemistry, Faculty of Sciences, University of Malaga, Bulevar Louis Pasteur, 31, 29010 Malaga, Spain.ORCID 0009-0006-9388-7465
Pedro SeoaneDepartment of Molecular Biology and Biochemistry, Faculty of Sciences, University of Malaga, Bulevar Louis Pasteur, 31, 29010 Malaga, Spain.ORCID 0000-0002-3020-1415
Juan A G RaneaDepartment of Molecular Biology and Biochemistry, Faculty of Sciences, University of Malaga, Bulevar Louis Pasteur, 31, 29010 Malaga, Spain.ORCID 0000-0003-0327-1837

Funding

European Union HORIZON-HLTH-2022-DISEASE-06, 101080580Fundación Progreso y Salud RH-0079-2021Instituto de Investigación Biomédica de Málaga PI RARE 24-03Instituto de Salud Carlos III IMP/00019, ACCI-05-703, ACCI-02-770Ministerio de Ciencia, Innovación y Universidades FPU21/01449, PRE2022/000510Ministerio de Ciencia, Innovación y Universidades PID2019-108096RB-C21, PID2022-140047OB-C21, CPP2022-010108
6 · The paper itself

Abstract

Neuromuscular diseases (NMDs) like Duchenne muscular dystrophy (DMD), limb-girdle muscular dystrophy (LGMD), and amyotrophic lateral sclerosis (ALS) are rare, progressive disorders with complex molecular mechanisms. Traditional transcriptomic analyses often struggle to capture systems-level dysregulation, especially given the small sample sizes typical of rare disease studies. Our differential expression analysis of eight public RNA-seq datasets from various cell types in DMD, LGMD, and ALS revealed not only disease-relevant pathways but also unexpected enrichments, such as renal development, suggesting systemic impacts beyond muscle tissue. To address limitations in capturing broader molecular mechanisms, we applied an integrative systems biology approach combining differential expression data, protein-protein interaction (PPI) networks, and network embedding techniques. Comparative functional enrichment revealed shared pathways, including glycosaminoglycan binding in both DMD and

Indexed as

Amyotrophic Lateral SclerosisGene Regulatory NetworksNeuromuscular DiseasesTranscriptomeComputational BiologyGene Expression ProfilingHumansMuscular Dystrophies, Limb-GirdleMuscular Dystrophy, DuchenneProtein Interaction Mapsdifferential gene expressionintegrative analysisnetwork-based analysisneuromuscular diseases

Identifiers

PMID41096646
PMCPMC12525345

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.