Evidence map›Paper›PMID 41094135›Full record

ArticleNature2025

Isolation, engineering and ecology of temperate phages from the human gut.

Sofia Dahlman, Laura Avellaneda-Franco, Emily L Rutten, Emily L Gulliver, Sean Solari, Michelle Chonwerawong, Ciaren Kett, Dinesh Subedi, Remy B Young, Nathan Campbell and 10 more

Abstract read
In one paragraph

Article in Nature, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Revisiting the life cycle of temperate phages.Nature reviews. Microbiology · 2026
    Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Remodelling of the gut virome after long-term fasting.NPJ biofilms and microbiomes · 2026
    Article
  8. Article
  9. Article
  10. Phage Therapy in Gastrointestinal Diseases: Current Status and Challenges.International journal of molecular sciences · 2026
    Review
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Phage Therapy forAntibiotics (Basel, Switzerland) · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Sofia DahlmanSchool of Biological Sciences, Monash University, Melbourne, Victoria, Australia.ORCID 0009-0009-9723-1705
Laura Avellaneda-FrancoSchool of Biological Sciences, Monash University, Melbourne, Victoria, Australia.ORCID 0000-0003-0503-0930
Emily L RuttenCentre for Innate Immunity and Infectious Disease, Hudson Institute of Medical Research, Melbourne, Victoria, Australia.ORCID 0000-0002-1619-3877
Emily L GulliverCentre for Innate Immunity and Infectious Disease, Hudson Institute of Medical Research, Melbourne, Victoria, Australia.ORCID 0000-0002-1820-6619
Sean SolariCentre for Innate Immunity and Infectious Disease, Hudson Institute of Medical Research, Melbourne, Victoria, Australia.
Michelle ChonwerawongCentre for Innate Immunity and Infectious Disease, Hudson Institute of Medical Research, Melbourne, Victoria, Australia.ORCID 0000-0003-3282-025X
Ciaren KettSchool of Biological Sciences, Monash University, Melbourne, Victoria, Australia.
Dinesh SubediSchool of Biological Sciences, Monash University, Melbourne, Victoria, Australia.ORCID 0000-0002-1357-9520
Remy B YoungCentre for Innate Immunity and Infectious Disease, Hudson Institute of Medical Research, Melbourne, Victoria, Australia.
Nathan CampbellSchool of Biological Sciences, Monash University, Melbourne, Victoria, Australia.
Jodee A GouldCentre for Innate Immunity and Infectious Disease, Hudson Institute of Medical Research, Melbourne, Victoria, Australia.
Jasmine D BellCentre for Innate Immunity and Infectious Disease, Hudson Institute of Medical Research, Melbourne, Victoria, Australia.ORCID 0009-0007-4483-1243
Callum A H DochertyCentre for Innate Immunity and Infectious Disease, Hudson Institute of Medical Research, Melbourne, Victoria, Australia.
Christopher J R TurkingtonAPC Microbiome Ireland & School of Microbiology, University College Cork, Cork, Ireland.
Neda Nezam-AbadiAPC Microbiome Ireland & School of Microbiology, University College Cork, Cork, Ireland.ORCID 0000-0001-6853-084X
Juris A GrasisDepartment of Molecular and Cell Biology, University of California, Merced, CA, USA.ORCID 0000-0002-3945-0135
Dena LyrasMonash Biomedicine Discovery Institute Department of Microbiology, Monash University, Melbourne, Victoria, Australia.ORCID 0000-0003-2345-9271
Robert A EdwardsCollege of Science and Engineering, Flinders University, Adelaide, South Australia, Australia.ORCID 0000-0001-8383-8949
Samuel C Forster *Centre for Innate Immunity and Infectious Disease, Hudson Institute of Medical Research, Melbourne, Victoria, Australia.ORCID 0000-0003-4144-2537
Jeremy J Barr *School of Biological Sciences, Monash University, Melbourne, Victoria, Australia. Jeremy.barr@monash.edu.ORCID 0000-0001-5603-5294

Funding

Computational and Experimental Resources for Virome Analysis in Inflammatory Bowel Disease (CERVAID)RC2DK116713 · NIDDK · WASHINGTON UNIVERSITY · PI WANG, DAVID · 2019 to 2023
$8.9M
NIDDK NIH HHS RC2 DK116713
6 · The paper itself

Abstract

Large-scale metagenomic and data-mining efforts have revealed an expansive diversity of bacteriophages (phages) within the human gut

Indexed as

BacteriaBacteriophagesGastrointestinal MicrobiomeProphagesCaco-2 CellsGenome, ViralHumansLysogenyVirus Activation

Identifiers

PMID41094135
PMCPMC12629997

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.