Evidence map›Paper›PMID 41093847›Full record

ArticleNature communications2025

Co-Conservation of synaptic gene expression and circuitry in collicular neurons.

Yuanming Liu, John A McDaniel, Chen Chen, Lu Yang, Arda Kipcak, Elise L Savier, Alev Erisir, Jianhua Cang, John N Campbell

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Visual Motion Processing in The Tree Shrew Superior Colliculus.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2026
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Yuanming LiuDepartment of Biology, University of Virginia, Charlottesville, VA, USA.
John A McDanielDepartment of Psychology, University of Virginia, Charlottesville, VA, USA.
Chen ChenDepartment of Psychology, University of Virginia, Charlottesville, VA, USA.
Lu YangDepartment of Biology, University of Virginia, Charlottesville, VA, USA.
Arda KipcakDepartment of Psychology, University of Virginia, Charlottesville, VA, USA.
Elise L SavierDepartment of Biology, University of Virginia, Charlottesville, VA, USA.ORCID http://orcid.org/0000-0001-7512-1630
Alev ErisirDepartment of Psychology, University of Virginia, Charlottesville, VA, USA.ORCID http://orcid.org/0000-0002-7538-7911
Jianhua CangDepartment of Biology, University of Virginia, Charlottesville, VA, USA. jc4r@virginia.edu.
John N CampbellDepartment of Biology, University of Virginia, Charlottesville, VA, USA. jnc4e@virginia.edu.

Funding

Women's Oncology Program - WONP30CA044579 · NCI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Thomas P. Loughran · 1987 to 2026
$72.1M
Neural Mechanisms of Stereoscopic VisionR01EY020950 · NEI · UNIVERSITY OF VIRGINIA · PI Jianhua Cang · 2010 to 2026
$5.9M
Visual Signal Transformation in the Retinocollicular PathwayR01EY026286 · NEI · UNIVERSITY OF VIRGINIA · PI Jianhua Cang · 2016 to 2026
$4.4M
Midbrain Circuits for Perceptual Decision-MakingUF1NS122040 · NINDS · UNIVERSITY OF VIRGINIA · PI BASSO, MICHELE A, BICKFORD, MARTHA E · 2021 to 2023
$3.8M
Molecular and Functional Taxonomy of Cardiovagal NeuronsR01HL153916 · NHLBI · UNIVERSITY OF VIRGINIA · PI CAMPBELL, JOHN NELSON · 2021 to 2025
$3.1M
Integration of visual information and behavioral modulation in the superior colliculusR00EY031783 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SAVIER, ELISE L · 2023 to 2025
$738k
Identification of cell-type specific visual circuits in the ventral lateral geniculate nucleusR21EY033528 · NEI · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI CAMPBELL, JOHN N, FOX, MICHAEL A · 2022 to 2023
$441k
Integration of visual information and behavioral modulation in the superior colliculusK99EY031783 · NEI · UNIVERSITY OF VIRGINIA · PI SAVIER, ELISE L · 2021 to 2022
$198k
American Diabetes Association (ADA) 1-18-INI-14NCI NIH HHS P30 CA044579NEI NIH HHS K99 EY031783NEI NIH HHS R00 EY031783NEI NIH HHS R01 EY020950NEI NIH HHS R01 EY026286NEI NIH HHS R21 EY033528NHLBI NIH HHS R01 HL153916NINDS NIH HHS UF1 NS122040U.S. Department of Health & Human Services | NIH | National Eye Institute (NEI) EY020950U.S. Department of Health & Human Services | NIH | National Eye Institute (NEI) EY026286U.S. Department of Health & Human Services | NIH | National Eye Institute (NEI) EY031783U.S. Department of Health & Human Services | NIH | National Eye Institute (NEI) EY033528U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases) HL153916U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NINDS) NS122040
6 · The paper itself

Abstract

The superior colliculus (SC), a midbrain sensorimotor hub, is anatomically and functionally similar across vertebrates, but how its cell types have evolved is unclear. Using single-nucleus transcriptomics, we compared the SC's molecular and cellular organization in mice, tree shrews, and humans. Despite over 96 million years of evolutionary divergence, we identified ~30 consensus neuronal subtypes, including Cbln2+ neurons that form the SC-pulvinar circuit in mice and tree shrews. Synapse-related genes were among the most conserved in the SC, unlike neocortex, suggesting co-conservation of synaptic genes and collicular circuitry. In contrast, cilia-related genes diverged significantly across species, highlighting the potential importance of the neuronal primary cilium in SC evolution. Additionally, we identified an inhibitory SC neuron in tree shrews and humans but not mice. Our findings reveal that the SC has evolved by conserving neuron subtypes, synaptic genes, and circuitry, while diversifying ciliary gene expression and an inhibitory neuron subtype.

Indexed as

NeuronsSuperior ColliculiSynapsesAnimalsCiliaFemaleGene Expression ProfilingHumansMaleMiceMice, Inbred C57BLTranscriptomeTupaiidae

Identifiers

PMID41093847
PMCPMC12528736

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.