Evidence map›Paper›PMID 41092279›Full record

ArticleThe ISME journal2025

Bacterial volatile organic compound specialists in the phycosphere.

Vaishnavi G Padaki, Xavier Mayali, Peter K Weber, Stephen J Giovannoni, Kaylene Abraham, Kerry Jacobs, Lindsay Collart, Kimberly H Halsey

Abstract read
In one paragraph

Article in The ISME journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Vaishnavi G PadakiDepartment of Microbiology, Oregon State University, Corvallis, OR 97331, United States.
Xavier MayaliLawrence Livermore National Laboratory, Livermore, CA 94550, United States.ORCID 0000-0002-2170-0773
Peter K WeberLawrence Livermore National Laboratory, Livermore, CA 94550, United States.ORCID 0000-0001-6022-6050
Stephen J GiovannoniDepartment of Microbiology, Oregon State University, Corvallis, OR 97331, United States.
Kaylene AbrahamDepartment of Microbiology, Oregon State University, Corvallis, OR 97331, United States.
Kerry JacobsDepartment of Microbiology, Oregon State University, Corvallis, OR 97331, United States.
Lindsay CollartDepartment of Microbiology, Oregon State University, Corvallis, OR 97331, United States.
Kimberly H HalseyDepartment of Microbiology, Oregon State University, Corvallis, OR 97331, United States.ORCID 0000-0002-1407-0777

Funding

DOE DE-AC52-07NA27344LLNL μBioSpheres Science Focus Area SCW1039National Science Foundation, Biological Oceanography Program OCE1948163US Department of Energy's (DOE) Genomic Science Program
6 · The paper itself

Abstract

Labile dissolved organic carbon in the surface oceans accounts for about one-fourth of carbon produced through photosynthesis and turns over on average every 3 days, fueling one of the largest engines of microbial heterotrophic production on the planet. Volatile organic compounds are poorly constrained components of dissolved organic carbon. Here, we detected 72 m/z signals, corresponding to unique volatile organic compounds, including petroleum hydrocarbons, totaling ~18.5 nM in the culture medium of a model diatom. In five cocultures with bacteria adapted to grow with this diatom, 1-59 m/z signals were depleted. Two of the most active volatile organic compound consumers, Marinobacter and Roseibium, contained more genes encoding volatile organic compound oxidation proteins, and attached to the diatom, suggesting volatile organic compound specialism. With nanoscale secondary ion mass spectrometry and stable isotope labeling, we confirmed that Marinobacter incorporated carbon from benzene, one of the depleted m/z signals detected in the co-culture. Diatom gross carbon production increased by up to 29% in the presence of volatile organic compound consumers, indicating that volatile organic compound consumption by heterotrophic bacteria in the phycosphere-a region of rapid organic carbon oxidation that surrounds phytoplankton cells-could impact global rates of gross primary production.

Indexed as

BacteriaDiatomsMarinobacterRoseobacterVolatile Organic CompoundsCarbonCoculture TechniquesCulture MediaSpectrometry, Mass, Secondary IonCarbonCulture MediaVolatile Organic Compoundsalgal-bacterial interactionshydrocarbon metabolismphycospherephytoplankton photosynthesisvolatile organic compounds

Identifiers

PMID41092279
PMCPMC12599314

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.