Evidence map›Paper›PMID 41091260›Full record

ArticleJournal of assisted reproduction and genetics2025

Assessing the efficacy of targeted enrichment protocol in PGT-M applications: a comprehensive analysis.

Evrim Unsal, Leyla Ozer, Volkan Baltaci, Turker Duman, Cihan Halicigil, Zeynep Koc, Asli Belen Saglam, Pelin Buyuk, Sercan Baris, Suleyman Aktuna

Abstract read
In one paragraph

Article in Journal of assisted reproduction and genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Evrim UnsalDepartment of Molecular Genetics, Mikrogen Genetic Diagnosis Center, 100. Yıl, Reşit Galip Cd. No:18, 06700, Çankaya/Ankara, Turkey. evrimunsal@mikrogenlab.com.ORCID http://orcid.org/0000-0002-3965-7347
Leyla OzerDepartment of Molecular Genetics, Mikrogen Genetic Diagnosis Center, 100. Yıl, Reşit Galip Cd. No:18, 06700, Çankaya/Ankara, Turkey.
Volkan BaltaciDepartment of Molecular Genetics, Mikrogen Genetic Diagnosis Center, 100. Yıl, Reşit Galip Cd. No:18, 06700, Çankaya/Ankara, Turkey.
Turker DumanDepartment of Molecular Biology, Faculty of Science, Ankara Universitesi, Ankara, Turkey.
Cihan HalicigilDepartment of Obstetrics, Gynecology and Reproductive Sciences, Yale School of Medicine, New Haven, CT, USA.
Zeynep KocDepartment of Molecular Genetics, Mikrogen Genetic Diagnosis Center, 100. Yıl, Reşit Galip Cd. No:18, 06700, Çankaya/Ankara, Turkey.
Asli Belen SaglamDepartment of Molecular Genetics, Mikrogen Genetic Diagnosis Center, 100. Yıl, Reşit Galip Cd. No:18, 06700, Çankaya/Ankara, Turkey.
Pelin BuyukDepartment of Molecular Genetics, Mikrogen Genetic Diagnosis Center, 100. Yıl, Reşit Galip Cd. No:18, 06700, Çankaya/Ankara, Turkey.
Sercan BarisDepartment of Molecular Genetics, Mikrogen Genetic Diagnosis Center, 100. Yıl, Reşit Galip Cd. No:18, 06700, Çankaya/Ankara, Turkey.
Suleyman AktunaDepartment of Molecular Genetics, Mikrogen Genetic Diagnosis Center, 100. Yıl, Reşit Galip Cd. No:18, 06700, Çankaya/Ankara, Turkey.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeThe aim of this study is to assess whether the Targeted Sequence Enrichment (TSE) protocol improves the efficiency of Preimplantation Genetic Testing for Monogenic Diseases (PGT-M) by reducing allele dropout (ADO) rates.

methodsThis retrospective data analysis included 928 patients and compared ADO rates across three different PGT-M approaches: (1) conventional targeted STR-based Single Cell Multiplex Nested PCR (PGT-M_Only), (2) Whole Genome Amplification (WGA)-based PGT-M method used in combined applications (WGA + PGT-M), and (3) WGA-bas. ed TSE method implemented for combined PGT-M applications. While the majority of cases involved single-gene disorders, some cases included testing for two, three, or four genes.

resultsADO rates were comparable between the TSE group and the PGT-M_Only group (1.01% and 0.80%, respectively). However, the conventional WGA-based PGT-M approach, lacking targeted enrichment, exhibited a significantly higher ADO rate of 4.76%, approximately five times greater. The complexity of the test, in terms of the number of genes analyzed per case, did not significantly influence ADO rates.

conclusionConventional WGA-based PGT-M methods using STR markers are associated with substantially higher ADO rates compared to the STR-based method with direct PCR from lysed single cells. The TSE protocol significantly reduces ADO, increases test sensitivity, and allows for simultaneous PGT-A and PGT-M analysis from a single WGA sample.

Indexed as

Genetic Diseases, InbornGenetic TestingPreimplantation DiagnosisAdultAllelesFemaleFertilization in VitroHumansMicrosatellite RepeatsMultiplex Polymerase Chain ReactionPregnancyRetrospective StudiesAllele drop outPGT-APGT-MSNPSTRTargeted sequencing enrichment

Identifiers

PMID41091260
PMCPMC12640291

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.