Evidence map›Paper›PMID 41090560›Full record

ArticleJournal of integrative plant biology2025

CPOP1 is a key enzyme required for nodule microenvironment control and successful symbiotic nitrogen fixation in Lotus japonicus.

Yu-Fang Tian, Yu Luo, Qi-Min Li, Zhi-Qin Zhang, Ya-Long Guo, Wei-Cai Yang

Abstract read
In one paragraph

Article in Journal of integrative plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yu-Fang TianState Key Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, the Chinese Academy of Sciences, Beijing, 100101, China.ORCID https://orcid.org/0009-0001-0346-2839
Yu LuoState Key Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, the Chinese Academy of Sciences, Beijing, 100101, China.ORCID https://orcid.org/0000-0003-2473-4933
Qi-Min LiState Key Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, the Chinese Academy of Sciences, Beijing, 100101, China.ORCID https://orcid.org/0009-0004-8922-8788
Zhi-Qin ZhangUniversity of Chinese Academy of Sciences, Beijing, 100049, China.ORCID https://orcid.org/0000-0002-7850-4503
Ya-Long GuoUniversity of Chinese Academy of Sciences, Beijing, 100049, China.ORCID https://orcid.org/0000-0002-4643-4889
Wei-Cai YangState Key Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, the Chinese Academy of Sciences, Beijing, 100101, China.ORCID https://orcid.org/0000-0003-0252-7079

Funding

CAS Project for Young Scientists in Basic Research YSBR-011National Key Research and Development Program of China 2016YFA0500500National Key Research and Development Program of China 2023YFD1200605National Key Research and Development Program of China 2023ZD04068Strategic Priority Research Program of the Chinese Academy of Sciences XDA24010205Strategic Priority Research Program of the Chinese Academy of Sciences XDA26030105
6 · The paper itself

Abstract

Symbiotic nitrogen fixation in legumes requires the exquisite regulation of the environment within the infected region of the nodule. The microaerobic environment critical for nitrogenase activity is maintained through the physical oxygen diffusion barrier of the cortex and locally the oxygen-binding protein leghemoglobin (Lb). Leghemoglobin binds and releases oxygen with heme moiety to maintain oxygen gradients inside the infected cell (IC) during nitrogen fixation. Heme binds to diverse proteins and plays critical roles in different redox reactions. However, the role and regulation of host-controlled heme production during symbiotic nitrogen fixation are not clear. Here, we identified coproporphyrinogen III oxidase plastid related 1 (CPOP1) as a key regulator of symbiotic heme biosynthesis in Lotus japonicus. CPOP1 is specifically highly expressed in nitrogen-fixing nodules, and knocking out CPOP1 alone causes leaf etiolation and dwarfism which could be recovered by the exogenous application of nitrogen source, indicating nitrogen fixation defect. The IC-specific expression of CPOP1 was directed by the -881 to -740 bp promoter region. The cpop1 mutant shows significantly increased nodule oxygen level and decreased nitrogen fixation activity compared to the wild-type. Intriguingly, bacteria proliferation is inhibited due to the down-regulation of cell division-related gene expression upon CPOP1 knockout. Our data showed that CPOP1 is essential for the microaerobic environment control of ICs and the activation of rhizobial nitrogenase required for symbiotic nitrogen fixation, through host-regulated nodule heme synthesis.

Indexed as

LotusNitrogen FixationPlant ProteinsRoot Nodules, PlantSymbiosisGene Expression Regulation, PlantHemeOxygenHemeOxygenPlant Proteinscoproporphyrinogen III oxidaseheme synthesisLotus japonicusmicroenvironment controlnodulesymbiotic nitrogen fixation

Identifiers

PMID41090560
PMCPMC12678686

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.