Evidence map›Paper›PMID 41089737›Full record

ArticleProceedings of SPIE--the International Society for Optical Engineering2025

Towards Fine-grained Renal Vasculature Segmentation: Full-Scale Hierarchical Learning with FH-Seg.

Yitian Long, Zhongze Wu, Xiu Su, Lining Yu, Ruining Deng, Haichun Yang, Yuankai Huo

Abstract read
In one paragraph

Article in Proceedings of SPIE--the International Society for Optical Engineering, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yitian LongData Science Institute, Vanderbilt University, Nashville, TN, USA.
Zhongze WuBig Data Institute, Central South University, Changsha, Hunan, China.
Xiu SuBig Data Institute, Central South University, Changsha, Hunan, China.
Lining YuDepartment of Computer Science, Vanderbilt University, Nashville, TN, USA.
Ruining DengDepartment of Computer Science, Vanderbilt University, Nashville, TN, USA.
Haichun YangDepartment of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, TN, USA.
Yuankai HuoData Science Institute, Vanderbilt University, Nashville, TN, USA.

Funding

Controlling Quality and Capturing Uncertainty in Advanced Diffusion Weighted MRIR01EB017230 · NIBIB · VANDERBILT UNIVERSITY · PI LANDMAN, BENNETT A. · 2015 to 2024
$5.1M
RESOLUTION OF GLOMERULOSCLEROSISR01DK056942 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI FOGO, AGNES B. · 2001 to 2021
$4.9M
Complementary ex vivo multimodal optical imaging and in vivo Raman spectroscopy to understand tissue dynamicsR01EB033385 · NIBIB · VANDERBILT UNIVERSITY · PI MAHADEVAN-JANSEN, ANITA, REESE, JOHN JEFFREY · 2022 to 2025
$2.6M
AI-empowered 3D Computer Vision and Image-Omics Integration for Digital Kidney HistopathologyR01DK135597 · NIDDK · VANDERBILT UNIVERSITY · PI Yuankai Huo · 2023 to 2026
$2.1M
Dual-wavelength endoscopic Raman probe for eosinophilic esophagitisR01DK132338 · NIDDK · VANDERBILT UNIVERSITY · PI MAHADEVAN-JANSEN, ANITA · 2022 to 2025
$1.7M
fMRI physiological signatures of aging and Alzheimer's DiseaseRF1MH125931 · NIMH · VANDERBILT UNIVERSITY · PI CHANG, CATHERINE ELIZABETH · 2021 to 2021
$1.1M
NIBIB NIH HHS R01 EB017230NIBIB NIH HHS R01 EB033385NIDDK NIH HHS R01 DK056942NIDDK NIH HHS R01 DK132338NIDDK NIH HHS R01 DK135597NIMH NIH HHS RF1 MH125931
6 · The paper itself

Abstract

Accurate fine-grained segmentation of the renal vasculature is critical for nephrological analysis, yet it faces challenges due to diverse and insufficiently annotated images. Existing methods struggle to accurately segment intricate regions of the renal vasculature, such as the inner and outer walls, arteries and lesions. In this paper, we introduce FH-Seg, a Full-scale Hierarchical Learning Framework designed for comprehensive segmentation of the renal vasculature. Specifically, FH-Seg employs full-scale skip connections that merge detailed anatomical information with contextual semantics across scales, effectively bridging the gap between structural and pathological contexts. Additionally, we implement a learnable hierarchical soft attention gates to adaptively reduce interference from non-core information, enhancing the focus on critical vascular features. To advance research on renal pathology segmentation, we also developed a Large Renal Vasculature (LRV) dataset, which contains 16,212 fine-grained annotated images of 5,600 renal arteries. Extensive experiments on the LRV dataset demonstrate FH-Seg's superior accuracies (71.23% Dice, 73.06% F1), outperforming Omni-Seg by 2.67 and 2.13 percentage points respectively. Code is available at: https://github.com/hrlblab/FH-seg.

Indexed as

Attention gatesImage segmentationRenal pathologySkip connection

Identifiers

PMID41089737
PMCPMC12516589

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.