Evidence map›Paper›PMID 41089718›Full record

ArticleISME communications2025

Acid tolerance and metabolic potential of comammox and nitrite-oxidizing

Yu Takahashi, Hirotsugu Fujitani, Itsuki Taniguchi, Yasuhiro Gotoh, Yuta Shimada, Shuto Ikeda, Tetsuya Hayashi, Kanako Tago, Masahito Hayatsu, Satoshi Tsuneda

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in ISME communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yu TakahashiDepartment of Life Science and Medical Bioscience, School of Advanced Science and Engineering, Waseda University, Shinjuku-ku, Tokyo, 162-8480, Japan.ORCID https://orcid.org/0009-0008-9381-3823
Hirotsugu FujitaniDepartment of Biological Sciences, Faculty of Science and Engineering, Chuo University, Bunkyo-ku, Tokyo, 112-8551, Japan.ORCID https://orcid.org/0000-0001-6868-5737
Itsuki TaniguchiDepartment of Bacteriology, Graduate School of Medical Sciences, Kyushu University, Fukuoka-shi, Fukuoka, 812-8582, Japan.ORCID https://orcid.org/0000-0001-9957-4941
Yasuhiro GotohAdvanced Genomics Center, National Institute of Genetics, Mishima-shi, Shizuoka, 411-8540, Japan.ORCID https://orcid.org/0000-0001-9716-2820
Yuta ShimadaDepartment of Life Science and Medical Bioscience, School of Advanced Science and Engineering, Waseda University, Shinjuku-ku, Tokyo, 162-8480, Japan.
Shuto IkedaDepartment of Life Science and Medical Bioscience, School of Advanced Science and Engineering, Waseda University, Shinjuku-ku, Tokyo, 162-8480, Japan.ORCID https://orcid.org/0009-0004-9783-0648
Tetsuya HayashiDepartment of Bacteriology, Graduate School of Medical Sciences, Kyushu University, Fukuoka-shi, Fukuoka, 812-8582, Japan.ORCID https://orcid.org/0000-0001-6366-7177
Kanako TagoDepartment of Green Innovation and Environmental Bioscience, School of Veterinary Medicine, Kitasato University, Sagamihara-shi, Kanagawa, 252-0329, Japan.ORCID https://orcid.org/0009-0008-5045-1308
Masahito HayatsuInstitute for Agro-Environmental Sciences, National Agriculture and Food Research Organization (NARO), Tsukuba-shi, Ibaraki, 305-8604, Japan.ORCID https://orcid.org/0000-0002-0891-7759
Satoshi TsunedaDepartment of Life Science and Medical Bioscience, School of Advanced Science and Engineering, Waseda University, Shinjuku-ku, Tokyo, 162-8480, Japan.ORCID https://orcid.org/0000-0002-4624-5359

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nitrification is the two-step microbial oxidation of ammonia to nitrate via nitrite, and it can contribute to environmental problems in soils. Some nitrifiers have been cultivated from acidic soils at pH <5.5, allowing their metabolic potential and phylogeny to be investigated through genomic analyses. However, the genomic features of the genus

Indexed as

acidic soilacid tolerancecomammoxcomplete ammonia oxidationenrichment culturemetagenomicsnitrificationnitrite oxidationNitrospira

Identifiers

PMID41089718
PMCPMC12516955

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.