Evidence map›Paper›PMID 41088280›Full record

ArticleJournal of translational medicine2025

Integrated profiling of semen microbiota and metabolome reveals dysregulation in primary idiopathic male infertility.

Hailin Yao, Chen Luo, Yang Xian, Bo Liu, Tingting Yang, Run Tian, Xiao Xiao, Wenrui Zhao, Lijuan Ying, Jinyan Xu and 9 more

Abstract read
In one paragraph

Article in Journal of translational medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
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  7. The therapeutic potential ofFrontiers in microbiology · 2026
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Hailin Yao *Department of Andrology/Human Sperm Bank of Sichuan Province, West China Second University Hospital, Sichuan University, Chengdu, 610041, Sichuan, People's Republic of China.
Chen Luo *Department of Andrology/Human Sperm Bank of Sichuan Province, West China Second University Hospital, Sichuan University, Chengdu, 610041, Sichuan, People's Republic of China.
Yang XianDepartment of Andrology/Human Sperm Bank of Sichuan Province, West China Second University Hospital, Sichuan University, Chengdu, 610041, Sichuan, People's Republic of China.
Bo LiuDepartment of Andrology/Human Sperm Bank of Sichuan Province, West China Second University Hospital, Sichuan University, Chengdu, 610041, Sichuan, People's Republic of China.
Tingting YangDepartment of Andrology/Human Sperm Bank of Sichuan Province, West China Second University Hospital, Sichuan University, Chengdu, 610041, Sichuan, People's Republic of China.
Run TianDepartment of Maternal and Child Health, West China School of Public Health and West China Fourth Hospital, Sichuan University, Chengdu, 610041, Sichuan, People's Republic of China.
Xiao XiaoDepartment of Andrology/Human Sperm Bank of Sichuan Province, West China Second University Hospital, Sichuan University, Chengdu, 610041, Sichuan, People's Republic of China.
Wenrui ZhaoDepartment of Andrology/Human Sperm Bank of Sichuan Province, West China Second University Hospital, Sichuan University, Chengdu, 610041, Sichuan, People's Republic of China.
Lijuan YingDepartment of Andrology/Human Sperm Bank of Sichuan Province, West China Second University Hospital, Sichuan University, Chengdu, 610041, Sichuan, People's Republic of China.
Jinyan XuDepartment of Andrology/Human Sperm Bank of Sichuan Province, West China Second University Hospital, Sichuan University, Chengdu, 610041, Sichuan, People's Republic of China.
Shasha LiuDepartment of Andrology/Human Sperm Bank of Sichuan Province, West China Second University Hospital, Sichuan University, Chengdu, 610041, Sichuan, People's Republic of China.
Yelin JiaDepartment of Andrology/Human Sperm Bank of Sichuan Province, West China Second University Hospital, Sichuan University, Chengdu, 610041, Sichuan, People's Republic of China.
Xuefeng LuoDepartment of Andrology/Human Sperm Bank of Sichuan Province, West China Second University Hospital, Sichuan University, Chengdu, 610041, Sichuan, People's Republic of China.
Dajian QiuDepartment of Andrology/Human Sperm Bank of Sichuan Province, West China Second University Hospital, Sichuan University, Chengdu, 610041, Sichuan, People's Republic of China.
Yuan LiuDepartment of Andrology/Human Sperm Bank of Sichuan Province, West China Second University Hospital, Sichuan University, Chengdu, 610041, Sichuan, People's Republic of China.
Qinqin WuDepartment of Andrology/Human Sperm Bank of Sichuan Province, West China Second University Hospital, Sichuan University, Chengdu, 610041, Sichuan, People's Republic of China.
Xiaohong LuoDepartment of Andrology/Human Sperm Bank of Sichuan Province, West China Second University Hospital, Sichuan University, Chengdu, 610041, Sichuan, People's Republic of China.
Zhenmi LiuDepartment of Maternal and Child Health, West China School of Public Health and West China Fourth Hospital, Sichuan University, Chengdu, 610041, Sichuan, People's Republic of China. zhenmiliu@scu.edu.cn.
Fuping LiDepartment of Andrology/Human Sperm Bank of Sichuan Province, West China Second University Hospital, Sichuan University, Chengdu, 610041, Sichuan, People's Republic of China. lfpsnake@scu.edu.cn.

Funding

Health Commission of Sichuan Province Medical Science and Technology Program 24SYJS01Sichuan Science and Technology Program 2024NSFSC0647
6 · The paper itself

Abstract

backgroundPrimary idiopathic male infertility remains a significant challenge due to its complex etiology and the lack of effective diagnostic tools. This study characterized seminal microbiota and metabolome alterations in this condition and their association with sperm quality, aiming to identify potential biomarkers.

methodsWe conducted an integrated microbiota-metabolome profiling study, enrolling 26 men with primary idiopathic infertility and 14 fertile controls. Semen samples were evaluated according to WHO guidelines. Microbiota composition was assessed by 5R 16S rRNA sequencing, and metabolites were profiled using an untargeted liquid chromatography-mass spectrometry (LC-MS) metabolomics approach. Statistical analyses included diversity assessment, differential abundance testing, correlation analysis, and ROC curve evaluation for potential biomarkers.

resultsInfertile men exhibited significantly lower seminal microbiota α-diversity, with 45 differentially abundant taxa identified. Metabolomics identified 147 differentially expressed metabolites (DEMs). Four DEMs (γ-Glu-Tyr, Indalone, Lys-Glu, γ-Glu-Phe) showed exceptional diagnostic potential (AUC > 0.97). Providencia rettgeri, Pediococcus pentosaceus, and Streptococcus pneumoniae abundance correlated positively with sperm quality, whereas Proteus penneri correlated negatively. Metabolites Arg-Arg, Fumarate, and Lpc 18:2 positively correlated with sperm motility, whereas Lys-Glu and Indalone showed negative correlations.

conclusionThis integrated analysis reveals distinct dysbiosis of the seminal microbiota and metabolic disruptions in idiopathic male infertility, offering novel insights into its mechanisms and biomarker discovery.

Indexed as

Infertility, MaleMetabolomeMetabolomicsMicrobiotaSemenAdultBiomarkersCase-Control StudiesHumansMaleBiomarkersBiomarkersInfertilityMaleMetabolomeMicrobiotaSemen

Identifiers

PMID41088280
PMCPMC12522667

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.