Evidence map›Paper›PMID 41087669›Full record

ArticleNPJ digital medicine2025

Evidential deep learning-based ALK-expression screening using H&E-stained histopathological images.

Sai Chandra Kosaraju, Sai Phani Parsa, Dae Hyun Song, Hyo Jung An, Yoon-La Choi, Joungho Han, Jung Wook Yang, Mingon Kang

Abstract read
In one paragraph

Article in NPJ digital medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sai Chandra KosarajuComputer Science Department, California Polytechnic State University, Pomona, CA, USA.
Sai Phani ParsaDepartment of Computer Science, University of Nevada, Las Vegas, NV, USA.
Dae Hyun SongDepartment of Pathology, Gyeongsang National University College of Medicine, Jinju, Republic of Korea.
Hyo Jung AnDepartment of Pathology, Gyeongsang National University College of Medicine, Jinju, Republic of Korea.
Yoon-La ChoiDepartment of Pathology and Translational Genomics, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Joungho HanDepartment of Pathology and Translational Genomics, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Jung Wook YangDepartment of Pathology, Gyeongsang National University Hospital, Gyeongsang National University College of Medicine, Jinju, Republic of Korea. woogi1982@gnu.ac.kr.
Mingon KangDepartment of Computer Science, University of Nevada, Las Vegas, NV, USA. mingon.kang@unlv.edu.

Funding

Biomedical Research Institute fund GNUHBRIF-2021-0003National Science Foundation Major Research Instrumentation 2117941
6 · The paper itself

Abstract

Efficient and accurate identification of genetic alterations of non-small cell lung cancer is a critical diagnostic process for targeted therapies. Utilizing advanced modern deep learning is a potential solution that can accurately predict genetic alterations from H&E-stained pathological images without additional testing procedures and costs. However, clinically applicable predictive power for Anaplastic Lymphoma Kinase (ALK) rearrangement has yet to succeed. To tackle these issues, we have developed a pathologically interpretable, evidence-based deep learning algorithm to screen ALK alterations to reduce unnecessary medical costs and understand the association between genetic alterations and pathological phenotypes. The proposed model resulted in +95% accuracy with both resection and biopsy datasets, which can be applicable in the clinic. The deep learning approach can maximize the benefits for screening genetic alterations as well as provide the most clinical utility. A stand-alone Python-based open-source software package is publicly available.

Identifiers

PMID41087669
PMCPMC12521586

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.