Evidence map›Paper›PMID 41085228›Full record

ArticleMicrobiologyOpen2025

Flood-Driven Microbial Resurgence: Functional Shifts and Beneficial Taxa in Post-Flood Agricultural and Residential Soils in Bangladesh.

Tanzim Rahman, S M Arefeen Haider, Fatema Tuz Zohra Khan, Md Shafiqul Islam, Zahid Hayat Mahmud, Muhammad Manjurul Karim, Mustafizur Rahman, Mohammad Jubair

Abstract read
In one paragraph

Article in MicrobiologyOpen, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Tanzim RahmanLaboratory of Environmental Health, Health Systems and Population Studies Division, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh.ORCID 0009-0009-4429-7487
S M Arefeen HaiderGenome Centre, Infectious Diseases Division, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh.ORCID 0000-0002-7527-1310
Fatema Tuz Zohra KhanGenome Centre, Infectious Diseases Division, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh.ORCID 0009-0009-4507-6897
Md Shafiqul IslamLaboratory of Environmental Health, Health Systems and Population Studies Division, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh.
Zahid Hayat MahmudLaboratory of Environmental Health, Health Systems and Population Studies Division, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh.ORCID 0000-0003-3278-0622
Muhammad Manjurul KarimDepartment of Microbiology, University of Dhaka, Dhaka, 1000, Bangladesh.ORCID 0000-0003-0476-8239
Mustafizur RahmanGenome Centre, Infectious Diseases Division, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh.
Mohammad JubairGenome Centre, Infectious Diseases Division, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh.ORCID 0000-0003-0249-0974

Funding

This study was supported by internal funding from the Genome Centre at icddr,b, based in Dhaka, Bangladesh.
6 · The paper itself

Abstract

Flooding events alter microbial communities, impacting soil health and ecosystem recovery. This study examined the 2024 Bangladesh floods' effects on microbial diversity in agricultural and residential soils. We collected paired soil samples from six flooded and two non-flooded sites within a single rural subdistrict after the floods. This sample size was logistically feasible for an initial survey and provides a foundational data set for future larger-scale investigations. Our findings revealed that flooding increased microbial diversity and facilitated the dispersal of unique taxa, with 45 species shared between flooded groups compared to only 6 in non-flooded controls. Notably, 29 beneficial microbes introduced post-flood were identified, categorized into 8 functional groups critical for soil recovery. Residential soils were enriched in nitrogen-fixing microbes, whereas agricultural soils showed higher abundance of phosphate solubilizers and plant growth-promoting rhizobacteria. Sulfur/iron cyclers and cyanobacteria demonstrated flood-adaptive roles. Pathogen screening identified no canonical human pathogens with the exception of Clostridium disporicum, detected only in one non-flooded sample. Archaea from Woesearchaeales and bacteria from the Gemmataceae dominated the microbial communities. Flooded environments harbored unique taxa, such as Sulfuricurvum sp. and the Nitrospira genus, which were absent in controls. Alpha diversity analysis revealed a higher Chao1 richness in flooded soils compared to controls, although statistical significance was not found due to insufficient sample size. Beta diversity showed greater variability between flooded soils relative to non-flooded controls, also not statistically significant. These findings demonstrate that flooding can act as a driver for dispersing beneficial microbes, supporting soil restoration and enhancing agricultural resilience.

Indexed as

BacteriaFloodsMicrobiotaSoil MicrobiologyAgricultureArchaeaBangladeshBiodiversitySoilSoil2024 floodsBangladeshflooding impactsmicrobial diversitysoil beneficial microbes

Identifiers

PMID41085228
PMCPMC12519525

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.