Evidence map›Paper›PMID 41084081›Full record

ArticleBMC research notes2025

Draft genome sequences of Salmonella enterica subsp. enterica isolates from fresh produce and agricultural environments in South Korea.

Su-Hyeon Kim, Ji Min Han, Gyu-Sung Cho, Erik Brinks, Charles M A P Franz, Mi-Kyung Park

Abstract read
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Article in BMC research notes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

6 authors.

Su-Hyeon KimSchool of Food Science and Biotechnology, and Food and Bio-industry Research Institute, Kyungpook National University, Daegu, 41566, Korea.
Ji Min HanSchool of Food Science and Biotechnology, and Food and Bio-industry Research Institute, Kyungpook National University, Daegu, 41566, Korea.
Gyu-Sung ChoDepartment of Microbiology and Biotechnology, Federal Research Institute of Nutrition and Food, Max Rubner-Institut, Hermann-Weigmann-Straße1, 24103, Kiel, Germany.
Erik BrinksDepartment of Microbiology and Biotechnology, Federal Research Institute of Nutrition and Food, Max Rubner-Institut, Hermann-Weigmann-Straße1, 24103, Kiel, Germany.
Charles M A P FranzDepartment of Microbiology and Biotechnology, Federal Research Institute of Nutrition and Food, Max Rubner-Institut, Hermann-Weigmann-Straße1, 24103, Kiel, Germany. charles.franz@mri.bund.de.
Mi-Kyung ParkSchool of Food Science and Biotechnology, and Food and Bio-industry Research Institute, Kyungpook National University, Daegu, 41566, Korea. parkmik@knu.ac.kr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesSalmonella enterica is a globally significant foodborne pathogen and a leading cause of gastrointestinal infections, with increasing concern over strains harboring antimicrobial resistance (AMR). This Data Note reports draft genome sequences of six S. enterica subsp. enterica isolates from fresh produce and agricultural environments in South Korea. The objective of this work was to provide genomic data on environmental Salmonella isolates, their serovar diversity, AMR gene profiling, and genetic attributes relevant to Salmonella surveillance and comparative genomics. DATA DESCRIPTION: Draft genomes of six isolates consisted of 3 to 7 contigs with genome sizes ranging from 4.89 to 5.02 Mbp and GC content (%) between 51.89% and 52.24%. The isolates were identified as four serovars, including three S. Typhimurium, S. I 4,[5],12:i:-, S. Kentucky, and S. Montevideo, and five MLST types. Among them, three strains representing serovars including Typhimurium,I 4,[5],12:i:-, and Kentucky harbored acquired AMR genes, conferring resistance to aminoglycosides, aminopenicillins, diaminopyrimidines, sulfonamide, and tetracyclines. Our study highlights the genomic diversity and resistance potential of S. enterica isolates derived from preharvest agricultural environments, providing valuable resources for future comparative analyses and AMR surveillance efforts.

Indexed as

Genome, BacterialSalmonella entericaAgricultureAnti-Bacterial AgentsDrug Resistance, BacterialRepublic of KoreaSalmonellaSerogroupWhole Genome SequencingAnti-Bacterial AgentsAntimicrobial resistanceFresh produce and agricultural environmentSalmonellaSouth korea

Identifiers

PMID41084081
PMCPMC12519850

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.