Evidence map›Paper›PMID 41083822›Full record

ArticleEMBO molecular medicine2025

Glycine decarboxylase advances IgA nephropathy by boosting mesangial cell proliferation through the pyrimidine pathway.

Yi Xiong, Fang Zeng, Kaiping Luo, Li Wang, Manna Li, Yanxia Chen, Tianlun Huang, Chengyun Xu, Gaosi Xu, Honghong Zou

Abstract read
In one paragraph

Article in EMBO molecular medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yi Xiong *Department of Nephrology, The Second Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, China.
Fang Zeng *Department of Nephrology, The Second Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, China.
Kaiping LuoDepartment of Nephrology, Ganzhou People's Hospital, Ganzhou, China.
Li WangDepartment of Nephrology, The Second Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, China.
Manna LiDepartment of Nephrology, The Second Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, China.
Yanxia ChenDepartment of Nephrology, The Second Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, China.
Tianlun HuangDepartment of Nephrology, The Second Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, China.
Chengyun XuDepartment of Nephrology, The Second Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, China.
Gaosi XuDepartment of Nephrology, The Second Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, China. ndefy08027@ncu.edu.cn.ORCID http://orcid.org/0000-0002-4001-9895
Honghong ZouDepartment of Nephrology, The Second Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, China. ndefy21195@ncu.edu.cn.ORCID http://orcid.org/0009-0002-3172-2850

Funding

Jiangxi Province Key Laboratory of Molecular Medicine No. 2024SSY06231Key Project of Jiangxi Provincial Nature Science Foundation No. 20224ACB206008Kidney Disease Engineering Technology Research Centre Foundation of Jiangxi Province No. 20164BCD40095MOST | National Natural Science Foundation of China (NSFC) No. 82260143Science and Technology Plan of Health Commission of Jiangxi Province No. 202210619the Jiangxi Provincial Natural Science Foundation No. 20252BAC200465"Thousand Talents Plan"project of introducing and training high-level talents of innovation and entrepreneurship in Jiangxi Province No. JXSQ2023201030
6 · The paper itself

Abstract

The proliferation of glomerular mesangial cells is a fundamental pathological change in immunoglobulin A nephropathy (IgAN). This study aims to elucidate the mechanisms that affect the proliferation of glomerular mesangial cells. Bioinformatics analysis combined with clinical detection identified the key molecule glycine decarboxylase (GLDC). In vitro experiments revealed that GLDC knockdown reduces the proliferative effect of pIgA on mesangial cells. Pyrimidine metabolism is involved in the proliferation regulation of mesangial cells by GLDC. Additionally, GLDC's regulation of glycolysis in mesangial cells was discovered, which further affects the progression of renal fibrosis and the proliferation of glomerular mesangial cells. Upon knockdown of the key rate-limiting enzymes of pyrimidine metabolism, CAD and DHODH, the overexpression of GLDC lost its regulatory effect on glycolysis. The regulatory mechanisms described above were confirmed by inhibiting GLDC expression in the kidneys in vivo. In conclusion, GLDC upregulates pyrimidine metabolic flux, which subsequently fuels glycolysis to promote mesangial cell proliferation, promoting IgAN progression.

Indexed as

Cell ProliferationGlomerulonephritis, IGAGlycine Dehydrogenase (Decarboxylating)Mesangial CellsPyrimidinesAnimalsGlycolysisHumansMiceGlycine Dehydrogenase (Decarboxylating)pyrimidinePyrimidinesGLDCGlomerular Mesangial CellsGlycolysisIgA NephropathyPyrimidine Metabolism

Identifiers

PMID41083822
PMCPMC12603144

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.