ArticleScientific data2025
A high-quality chromosome-level genome assembly of the common carp (Cyprinus carpio var. Xiangxi).
Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
2 citing papers in PubMed.
- A helix-loop-helix gene orchestrates male fate in common carp.Science advances · 2026Article
- A high-quality chromosome-level genome assembly of the common carp (Cyprinus carpio var. Xiangxi).Scientific data · 2025Article
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Authors and funding
5 authors.
Funding
Abstract
Cyprinus carpio var. Xiangxi is a regionally farmed rice-field carp endemic to the Xiangxi region of Hunan Province, China. To adapt to the rice-fish farming environment, this variety has developed a range of genetic and physiological adaptations. However, genomic research on this strain remains limited. Here, we assembled a high-quality chromosome-level genome of C. carpio var. Xiangxi to fill this knowledge gap. Using PacBio HiFi, DNBSEQ, and Hi-C technology, We generated a 1.54 Gb genome with a contig N50 of 28.12 Mb. Using Hi-C data, 99.38% of the assembly (1,535.34 Mb) was anchored to 50 pseudochromosomes, yielding a scaffold N50 of 30.26 Mb. The quality value and Benchmarking Universal Single-Copy Ortholog score were 62.32 and 97.4%, respectively, indicating that our genome sequence is of high quality and completeness. A total of 46,362 protein-coding genes were predicted, of which 45,409 (97.94%) were functionally annotated. This study provides a valuable genomic resource for the conservation of C. carpio var. Xiangxi and offers new insights into the evolutionary history of common carp.
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