Evidence map›Paper›PMID 41081621›Full record

ArticleJournal of chemical theory and computation2025

Black-Box Simulations of Anharmonic Vibrational Chiroptical Spectra: Problems with Property Third Derivatives and the Solvent.

Qin Yang, Valery Andrushchenko, Jana Hudecová, Josef Kapitán, Julien Bloino, Isabelle Bowker, Petr Bouř

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Article in Journal of chemical theory and computation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Ultraviolet Raman Optical Activity as a Window Into Peptide Backbone Structure.Chembiochem : a European journal of chemical biology · 2026
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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Qin YangInstitute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, Prague 16610, Czech Republic.ORCID 0000-0001-6700-475X
Valery AndrushchenkoInstitute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, Prague 16610, Czech Republic.ORCID 0000-0002-4874-0548
Jana HudecováDepartment of Optics, Palacký University Olomouc, 17. listopadu 12, Olomouc 77900, Czech Republic.
Josef KapitánDepartment of Optics, Palacký University Olomouc, 17. listopadu 12, Olomouc 77900, Czech Republic.ORCID 0000-0002-1916-9186
Julien BloinoScuola Normale Superiore di Pisa, Piazza dei Cavalieri 7, Pisa 56126, Italy.ORCID 0000-0003-4245-4695
Isabelle BowkerInstitute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, Prague 16610, Czech Republic.
Petr BouřInstitute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, Prague 16610, Czech Republic.ORCID 0000-0001-8469-1686

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chiroptical methods, including vibrational circular dichroism (VCD) and Raman optical activity (ROA), reveal details about molecular structure. For three model molecules, α-pinene, camphor, and fenchone, we show that increased sensitivity of modern spectrometers makes it possible to record even fine spectral features, such as overtone and combination bands. However, understanding, interpretation, and simulation of them require relatively expensive computations, going beyond the harmonic approximation. For this purpose, vibrational perturbation theory at the second order (VPT2) has proven to provide an excellent price-performance balance. As it becomes more common, inconsistencies in electronic structure calculations, hidden by error compensation at the harmonic level, emerge. In particular, while trying to interpret the spectra, we found that the commonly used polarizable continuum models (PCM) of solvent may introduce erroneous perturbations to the higher derivatives of dipole moments and polarizabilities needed to simulate spectral intensities. We therefore analyze the experimental spectra on the basis of the simulations and explore parameters allowing for a "black-box" VPT2 application. In particular, explicit cavities used for the hydrogen atoms resulted in excessively large third derivatives of molecular polarizabilities and sometimes led to incorrect signs of ROA and VCD bands, even for fundamental transitions. This could be partially rectified by a combination of different approximation levels used for the calculation of different properties, or by using PCM cavities not explicitly adapted for hydrogen atoms. Under these conditions, VPT2 combined with a proper treatment of resonances appears as an excellent tool to simulate and understand the spectra, including the assignment of weak anharmonic bands.

Identifiers

PMID41081621
PMCPMC12573746

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.