Evidence map›Paper›PMID 41080526›Full record

ArticleISME communications2025

Native edaphoclimatic regions shape soil communities of crop wild progenitors.

María José Fernández-Alonso, Miguel de Celis, Ignacio Belda, Javier Palomino, Carlos García, Juan Gaitán, Jun-Tao Wang, Luis Abdala-Roberts, Fernando D Alfaro, Diego F Angulo-Pérez and 23 more

Erratum issuedAbstract read
In one paragraph

Article in ISME communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Microbial biotechnology meets ecological theory: a unified framework to design industrial microbial consortia.International microbiology : the official journal of the Spanish Society for Microbiology · 2026
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

33 authors.

María José Fernández-AlonsoArea of Biodiversity and Conservation, Department of Biology and Geology, Physics and Inorganic Chemistry, Rey Juan Carlos University, C/ Tulipán s/n, 28933 Móstoles, Spain.
Miguel de CelisDepartamento de Suelo, Planta y Calidad Ambiental, Instituto de Ciencias Agrarias, Consejo Superior de Investigaciones Científicas, 28006 Madrid, Spain.
Ignacio BeldaDepartment of Genetics, Physiology and Microbiology, Faculty of Biology, Complutense University of Madrid, 28040 Madrid, Spain.
Javier PalominoArea of Biodiversity and Conservation, Department of Biology and Geology, Physics and Inorganic Chemistry, Rey Juan Carlos University, C/ Tulipán s/n, 28933 Móstoles, Spain.
Carlos GarcíaDepartment of Soil and Water Conservation and Organic Waste Management, CEBAS-CSIC, 30100 Murcia, Spain.
Juan GaitánInstituto de Suelos - INTA Castelar, CONICET, Universidad Nacional de Luján, 6700 Luján, Buenos Aires, Argentina.
Jun-Tao WangHawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW 2751, Australia.
Luis Abdala-RobertsDepartamento de Ecología Tropical, Campus de Ciencias Biológicas y Agropecuarias, Universidad Autónoma de Yucatán, 97000 Mérida, Yucatán, Mexico.
Fernando D AlfaroGEMA Center for Genomics, Ecology and Environment, Universidad Mayor, Santiago 8580745, Chile.
Diego F Angulo-PérezUnidad de Recursos Naturales, Centro de Investigación Científica de Yucatán, 97205 Mérida, Yucatán, Mexico.
Manoj-Kumar ArthikalaCiencias Agrogenómicas, Escuela Nacional de Estudios Superiores Unidad León, Universidad Nacional Autónoma de México, León  37689, Guanajuato, Mexico.
Danteswari ChalasaniDepartment of Plant Sciences, School of Life Science, University of Hyderabad, Hyderabad, 500046, Telangana, India.
Jason CorwinMicrobiome Network and Department of Agricultural Biology, Colorado State University, Fort Collins, CO 80523-1177, United States.
Duan Gui-LanState Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China.
Antonio Hernandez-LopezCiencias Agrogenómicas, Escuela Nacional de Estudios Superiores Unidad León, Universidad Nacional Autónoma de México, León  37689, Guanajuato, Mexico.
Kalpana NanjareddyCiencias Agrogenómicas, Escuela Nacional de Estudios Superiores Unidad León, Universidad Nacional Autónoma de México, León  37689, Guanajuato, Mexico.
Siddaiah Chandra NayakaDepartment of Studies in Biotechnology, University of Mysore, Manasagangotri, Mysuru 570006, Karnataka, India.
Babak PasariDepartment of Agronomy and Plant Breeding, Islamic Azad University, Sanandaj Branch, Sanandaj 6616935391, Iran.
Thanuku Samuel Sampath Kumar PatroAgricultural Research Station (ACRIP center-small millets), Acharya NG Ranga Agricultural University, Vizianagaram 535001, Andhra Pradesh, India.
Appa Rao PodileDepartment of Plant Sciences, School of Life Science, University of Hyderabad, Hyderabad, 500046, Telangana, India.
Teresa Quijano-MedinaDepartamento de Ecología Tropical, Campus de Ciencias Biológicas y Agropecuarias, Universidad Autónoma de Yucatán, 97000 Mérida, Yucatán, Mexico.
Daniela S RiveraGEMA Center for Genomics, Ecology and Environment, Universidad Mayor, Santiago 8580745, Chile.
Pullabhotla Venkata Subba Rama Narshima SarmaDepartment of Plant Sciences, School of Life Science, University of Hyderabad, Hyderabad, 500046, Telangana, India.
Salar ShaafLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Seeland, Germany.
Pankaj TrivediMicrobiome Network and Department of Agricultural Biology, Colorado State University, Fort Collins, CO 80523-1177, United States.
Qingwen YangNational Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Yue YinState Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China.
Eli ZaadyKatif Research & Development Center, Sdot Negev, Netivot 8771002, Israel.
Yong-Guan ZhuState Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China.
Brajesh K SinghHawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW 2751, Australia.
Manuel Delgado-BaquerizoLaboratorio de Biodiversidad y Funcionamiento Ecosistémico, Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, 41012 Sevilla, Spain.
Pablo García-PalaciosDepartamento de Suelo, Planta y Calidad Ambiental, Instituto de Ciencias Agrarias, Consejo Superior de Investigaciones Científicas, 28006 Madrid, Spain.
Ruben MillaArea of Biodiversity and Conservation, Department of Biology and Geology, Physics and Inorganic Chemistry, Rey Juan Carlos University, C/ Tulipán s/n, 28933 Móstoles, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Unveiling the soil biological communities ecologically associated with crop wild progenitors (CWPs) in their habitats of origin is essential for advancing productive and sustainable agriculture. A field survey was conducted to investigate the edaphoclimatic conditions and soil bacterial, fungal, protist, and invertebrate communities of 125 populations of direct progenitors of major crops for world agriculture. The wild populations clustered into four ecoregions shaped by two edaphoclimatic dimensions: one summarizing variations in soil sand contents and nutrients concentrations, and the other featuring changes in aridity, soil pH, and carbon storage potential. We identified a common soil core community across CWPs that varied significantly along deserts to tropical seasonal forests and savannas. The assembly of the soil core community was driven by varying environmental preferences amongst soil biodiversity kingdoms, reflecting potential shifts in their functional profiles. The tropical ecoregion exhibited higher proportion of acidophilic bacteria, fungal, and protist parasites, whilst desert ecosystems harboured greater abundances of saprophytic fungi and heterotrophic protists. Moreover, CWPs displayed unique microhabitats that incorporate variability into the soil community assembly. Our work reveals the biogeography of soil communities associated with CWPs, the first step towards the development of microbial rewilding initiatives.

Indexed as

centres of origincrop wild progenitorsecoregionsedaphoclimaterewildingsoil core microbiomesoil core microfauna

Identifiers

PMID41080526
PMCPMC12515042

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.