Evidence map›Paper›PMID 41078212›Full record

ArticleJournal of biochemistry2025

Identification of MRVI1-interacting proteins by biotin-based proximity labelling reveals NPM-ALK-dependent interaction dynamics.

Kosuke Higashi, Yuuki Tanaka, Hidetaka Kosako, Kazumasa Aoyama

Abstract read
In one paragraph

Article in Journal of biochemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Kosuke HigashiDivision of Hygienic Chemistry, Faculty of Pharmacy, Keio University, 1-5-30 Shibakoen, Minato-ku, Tokyo 105-8512, Japan.
Yuuki TanakaDivision of Hygienic Chemistry, Faculty of Pharmacy, Keio University, 1-5-30 Shibakoen, Minato-ku, Tokyo 105-8512, Japan.
Hidetaka KosakoDivision of Cell Signaling, Institute of Advanced Medical Sciences, Tokushima University, 3-18-15 Kuramoto-cho, Tokushima 770-8503, Japan.
Kazumasa AoyamaDivision of Hygienic Chemistry, Faculty of Pharmacy, Keio University, 1-5-30 Shibakoen, Minato-ku, Tokyo 105-8512, Japan.ORCID 0000-0002-2136-4562

Funding

JSPS KAKENHI 23 K07851the Japanese Society of Hematology; the Keio University Academic Development Fundthe Keio University Fukuzawa Fund; Medical Research Center Initiative for High Depth Omics, the Chemo-Sero-Therapeutic Research Institute (Kaketsuken)the Kobayashi Foundation; the Friends of Leukemia Research Fund (Takaku Fumimaro Award)the Suzuken Memorial Foundation; the Mochida Memorial Foundation; and the Takeda Science Foundation
6 · The paper itself

Abstract

The murine retrovirus integration site 1 (MRVI1) gene encodes an endoplasmic reticulum (ER)-associated membrane protein involved in calcium signalling, yet its molecular interaction network remains largely undefined. Here, we employed TurboID-based proximity labelling to construct the first comprehensive map of MRVI1-associated proteins in mammalian cells. This analysis identified >700 candidate interactors, including ER-localized factors and components of intracellular trafficking, consistent with the subcellular localization and signalling role of MRVI1. To investigate oncogenic modulation, we examined how co-expression of NPM-ALK-a constitutively active tyrosine kinase implicated in lymphoid malignancies-reshapes the MRVI1 interactome. Quantitative proteomics revealed that while the overall composition of MRVI1-associated proteins was largely preserved, a subset of interactions was selectively enhanced or attenuated by NPM-ALK. The association of MRVI1 with several signalling-related proteins was enhanced by NPM-ALK, including 12 proteins that have all been previously implicated in cancer-related pathways. In contrast, proteins whose interaction with MRVI1 was suppressed were functionally enriched in the Gene Ontology term 'negative regulation of apoptotic process'. Notably, anti-apoptotic regulators such as DDB1, PHB2 and NOTCH2 showed significantly reduced proximity labelling, suggesting that MRVI1 may participate in apoptosis-related networks disrupted during oncogenic transformation. Together, our findings demonstrate that MRVI1 forms a functionally diverse protein network that can be selectively remodelled by oncogenic signalling. This study not only uncovers potential mechanisms by which MRVI1 contributes to transformation but also provides a valuable proteomic resource for future investigation of MRVI1 function and regulation.

Indexed as

BiotinProtein-Tyrosine KinasesAnimalsHEK293 CellsHumansMiceProhibitinsProtein Interaction MapsProteomicsBiotinPHB2 protein, humanPHB protein, humanProhibitinsProtein-Tyrosine Kinasesapoptosisendoplasmic reticulumMRVI1NPM–ALKproteomicsproximity labelling

Identifiers

PMID41078212
PMCPMC12676225

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.