Evidence map›Paper›PMID 41077421›Full record

ArticleJournal of clinical periodontology2026

Spatial Transcriptomic Assessments of Gene Expression Profiles in Human Peri-Implant Lesions.

C Dionigi, A C Ericson, A Shikhan, L Larsson, T Berglundh

Abstract read
In one paragraph

Article in Journal of clinical periodontology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Peri-Implant Diseases: The Past, the Present, the Future.Journal of periodontal research · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

C DionigiDepartment of Periodontology, Institute of Odontology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.ORCID 0000-0002-4195-0729
A C EricsonDepartment of Periodontology, Institute of Odontology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
A ShikhanDepartment of Periodontology, Institute of Odontology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
L LarssonDepartment of Oral Biochemistry, Institute of Odontology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
T BerglundhDepartment of Periodontology, Institute of Odontology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.

Funding

Science for Life LaboratorySwedish TUA TUAGBG-979431Uppsala Multidisciplinary Center for Advanced Computational Science
6 · The paper itself

Abstract

aimTo analyse gene expression profiles in human tissue samples obtained from dental implant sites with or without peri-implantitis. MATERIALS AND

methodsSoft-tissue biopsy samples obtained from patients presenting with implants with severe peri-implantitis and adjacent reference implants with no signs of peri-implantitis were analysed by spatial transcriptomics (n = 4), RNA-sequencing (n = 20) and immunohistochemistry (n = 38).

resultsThe analysis disclosed evident associations between distinct gene clusters and specific tissue compartments in both groups of specimens. Samples from peri-implantitis sites showed higher levels of gene activity than samples from reference implant sites. Gene-set enrichment analysis revealed that several important biological pathways, for example, 'regulation of antimicrobial host response', 'collagen fibril organisation' and 'regulation of angiogenesis', were severely dysregulated in peri-implantitis lesions when compared to reference implant sites. Similarly, immunohistochemical evaluation showed elevated levels of proteins corresponding to the most up-regulated, differentially expressed genes (DEGs), which were identified by spatial transcriptomics and RNA-sequencing.

conclusionsPeri-implant lesions demonstrated associations between gene clusters and specific tissue compartments. Several biological pathways linked to the activation of host response towards bacterial insults were dysregulated in peri-implantitis specimens when compared to reference implant samples.

Indexed as

Dental ImplantsGene Expression ProfilingPeri-ImplantitisTranscriptomeAdultAgedFemaleHumansImmunohistochemistryMaleMiddle AgedSequence Analysis, RNADental Implantsbiopsyimmunohistochemistryperi‐implantitisRNA‐sequencingspatial transcriptomics

Identifiers

PMID41077421
PMCPMC12695443

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