Evidence map›Paper›PMID 41073665›Full record

ArticleNature microbiology2025

A host-directed adjuvant sensitizes intracellular bacterial persisters to antibiotics.

Kuan-Yi Lu, Xiangbo Yang, Matthew J G Eldridge, Rongfeng Sun, Rachel T Giorgio, Benjamin I Morris, Nikki J Wagner, Brian Hardy, Matthew Axtman, Sarah E Rowe and 6 more

Abstract read
In one paragraph

Article in Nature microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

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  10. [Chlorhexidine and Polident Induce the Formation ofSichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition · 2026
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Kuan-Yi LuDepartment of Microbiology and Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Xiangbo YangCenter for Integrative Chemical Biology and Drug Discovery, Division of Chemical Biology and Medicinal Chemistry, Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Matthew J G EldridgeDepartment of Microbiology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-6538-4012
Rongfeng SunDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Rachel T GiorgioDepartment of Microbiology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0003-2790-0300
Benjamin I MorrisDepartment of Microbiology, Harvard Medical School, Boston, MA, USA.
Nikki J WagnerDepartment of Microbiology and Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0002-4872-3107
Brian HardyCenter for Integrative Chemical Biology and Drug Discovery, Division of Chemical Biology and Medicinal Chemistry, Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Matthew AxtmanCenter for Integrative Chemical Biology and Drug Discovery, Division of Chemical Biology and Medicinal Chemistry, Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Sarah E RoweDepartment of Microbiology and Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0001-8955-359X
Xiaodong WangCenter for Integrative Chemical Biology and Drug Discovery, Division of Chemical Biology and Medicinal Chemistry, Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Vance G FowlerDivision of Infectious Diseases, Duke University School of Medicine, Durham, NC, USA.
Qingyun LiuDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0002-2284-5050
Sophie HelaineDepartment of Microbiology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-9877-4180
Kenneth H PearceCenter for Integrative Chemical Biology and Drug Discovery, Division of Chemical Biology and Medicinal Chemistry, Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0001-8138-5421
Brian P ConlonDepartment of Microbiology and Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. brian_conlon@med.unc.edu.ORCID http://orcid.org/0000-0002-2155-8375

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
Virology, Immunology, and Microbiology CoreP30AI050410 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVID M. MARGOLIS · 2001 to 2026
$76.9M
Diabetes and Antibiotic Treatment FailureR01AI173004 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Brian Patrick Conlon, Lance R. Thurlow · 2023 to 2026
$2.8M
Calprotectin and Antibiotic Activities at the Infection InterfaceR01AI179695 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Brian Patrick Conlon, Thomas Everett Kehl-Fie · 2024 to 2026
$2.3M
A theranostic ultrasound approach to improve chronic wound treatment using phase-change contrast agentsR01AI167978 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Virginie Papadopoulou, Sarah Elizabeth Rowe · 2023 to 2026
$2.1M
Inside out: Revealing strategies for intracellular S. aureus persister eradicationK99AI184675 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Kuan-Yi Lu · 2025 to 2026
$230k
Burroughs Wellcome Fund (BWF) PATHNCI NIH HHS P30 CA016086NIAID NIH HHS K99 AI184675NIAID NIH HHS P30 AI050410NIAID NIH HHS R01 AI167978NIAID NIH HHS R01 AI173004NIAID NIH HHS R01 AI179695U.S. Department of Health Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI167978U.S. Department of Health Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI173004U.S. Department of Health Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI179695
6 · The paper itself

Abstract

Intracellular bacterial reservoirs contribute to antibiotic treatment failure by fostering metabolically dormant persister cells that are highly tolerant to killing. However, strategies to effectively target intracellular persister cells remain limited. Here we developed a high-throughput screen to identify compounds that modulate the metabolic activity of intracellular Staphylococcus aureus. The identified compound, KL1, increases intracellular bacterial metabolic activity and sensitizes persister populations of S. aureus to antibiotics, without causing cytotoxicity or bacterial outgrowth. KL1 also exhibits adjuvant activity against intramacrophage Salmonella enterica Typhimurium and Mycobacterium tuberculosis, as well as in murine infection models of S. aureus and S. Typhimurium infection. Transcriptomic analysis and further mechanistic studies reveal that KL1 modulates host immune response genes and suppresses the production of reactive species in host macrophages, alleviating a key inducer of antibiotic tolerance. Our findings highlight the potential to target intracellular persisters by stimulating their metabolism. There are two major problems in the field of antimicrobial chemotherapy-antibiotic resistance and antibiotic tolerance. Antibiotic tolerance has been frequently connected with poor treatment outcomes in the clinic. Unlike antibiotic resistance, which permits bacterial growth in the presence of drugs, antibiotic tolerance allows bacteria to withstand multiple antibiotics for prolonged periods. The extended survival of tolerant bacteria further predisposes them to evolve antibiotic resistance over time, underscoring the critical need to address antibiotic tolerance. Host interactions have been shown to induce persister formation in numerous pathogens, with the production of reactive oxygen and nitrogen species heavily implicated in the collapse of bacterial metabolic activity and entry into an antibiotic-tolerant state. Yet, tools to study or target this process remain limited. Here we developed a high-throughput screen to identify compounds that modulate intracellular S. aureus metabolism, leading to the discovery of KL1, a host-directed compound that sensitizes persisters to antibiotic killing.

Indexed as

Anti-Bacterial AgentsStaphylococcus aureusAnimalsDisease Models, AnimalDrug Resistance, BacterialHigh-Throughput Screening AssaysHost-Pathogen InteractionsHumansMacrophagesMiceMice, Inbred C57BLMicrobial Sensitivity TestsMycobacterium tuberculosisSalmonella typhimuriumStaphylococcal InfectionsAnti-Bacterial Agents

Identifiers

PMID41073665
PMCPMC12578635

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.