Evidence map›Paper›PMID 41073662›Full record

ArticleNature microbiology2025

Dipeptidase 1 is a functional receptor for a porcine coronavirus.

Jérémy Dufloo, Ignacio Fernández, Atousa Arbabian, Ahmed Haouz, Nigel Temperton, Luis G Gimenez-Lirola, Félix A Rey, Rafael Sanjuán

Abstract read
In one paragraph

Article in Nature microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jérémy Dufloo *Institute for Integrative Systems Biology, CSIC-Universitat de València, Paterna, València, Spain.ORCID http://orcid.org/0000-0002-4963-1378
Ignacio Fernández *Institut Pasteur, Université Paris Cité, CNRS UMR 3569, Structural Virology Unit, Paris, France.ORCID http://orcid.org/0000-0003-2632-8111
Atousa ArbabianInstitut Pasteur, Université Paris Cité, CNRS UMR 3569, Structural Virology Unit, Paris, France.
Ahmed HaouzInstitut Pasteur, Université Paris Cité, CNRS UMR 3528, Crystallography Facility-C2RT, Paris, France.ORCID http://orcid.org/0000-0003-1196-1635
Nigel TempertonViral Pseudotype Unit, Medway School of Pharmacy, Universities of Kent and Greenwich, Chatham, UK.ORCID http://orcid.org/0000-0002-7978-3815
Luis G Gimenez-LirolaDepartment of Veterinary Diagnostic and Production Animal Medicine, Iowa State University, Ames, IA, USA.
Félix A ReyInstitut Pasteur, Université Paris Cité, CNRS UMR 3569, Structural Virology Unit, Paris, France. felix.rey@pasteur.fr.ORCID http://orcid.org/0000-0002-9953-7988
Rafael SanjuánInstitute for Integrative Systems Biology, CSIC-Universitat de València, Paterna, València, Spain. rafael.sanjuan@uv.es.

Funding

European Molecular Biology Organization (EMBO) ALTF-140-2021
6 · The paper itself

Abstract

Coronaviruses of the subgenus Embecovirus include several important pathogens, such as the human seasonal coronaviruses HKU1 and OC43, bovine coronavirus and porcine haemagglutinating encephalomyelitis virus (PHEV). While sialic acid is thought to be required for embecovirus entry, protein receptors remain unknown for most of these viruses. Here we show that PHEV does not require sialic acid for entry and instead uses dipeptidase 1 (DPEP1) as a receptor. Cryo-electron microscopy at 3.4-4.4 Å resolution revealed that, unlike other embecoviruses, PHEV displays both open and closed conformations of its spike trimer at steady state. The spike receptor-binding domain (RBD) exhibits extremely high sequence variability across embecoviruses, and we found that DPEP1 usage is specific to PHEV. In contrast, the X-ray structure of the RBD-DPEP1 complex at 2.25 Å showed that the structural elements involved in receptor binding are conserved, highlighting the remarkable versatility of this structural organization in adopting novel receptor specificities.

Indexed as

CoronavirusDipeptidasesReceptors, VirusAnimalsCryoelectron MicroscopyCrystallography, X-RayHumansModels, MolecularN-Acetylneuraminic AcidProtein BindingProtein ConformationProtein DomainsSpike Glycoprotein, CoronavirusSwineVirus InternalizationDipeptidasesN-Acetylneuraminic AcidReceptors, VirusSpike Glycoprotein, Coronavirus

Identifiers

PMID41073662
PMCPMC12578638

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.