ArticleNature communications2025
AI-powered high-throughput digital colony picker platform for sorting microbial strains by multi-modal phenotypes.
Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
5 citing papers in PubMed.
- Harnessing synthetic microbial communities for desert vegetation restoration.Synthetic and systems biotechnology · 2027Review
- From Traditional to Omics-Driven: Emerging Strategies for Isolation, Cultivation, and Identification of Plant Endophytes.Plants (Basel, Switzerland) · 2026Review
- Probiotic-Plant Bioactive Synergy in Gut Health: Mechanisms, Antimicrobial Activity, and Translational Challenges.Nutrients · 2026Review
- Article
- Unlocking Microbial Dark Matter: A Comprehensive Review of Isolation Technologies from Traditional Culturing to Single-Cell Technologies.Microorganisms · 2026Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
13 authors.
Funding
Abstract
Phenotype-based screening remains a major bottleneck in the development of microbial cell factories. Here, we present a Digital Colony Picker (DCP), an AI-powered platform for automated, high-throughput screening and export of microbial clones based on growth and metabolic phenotypes at single-cell resolution, without agar or physical contact. Using a microfluidic chip comprising 16,000 addressable picoliter-scale microchambers, individual cells are compartmentalized, dynamically monitored by AI-driven image analysis, and selectively exported via laser-induced bubble technique. Applied to Zymomonas mobilis, DCP enabled en masse screening and identified a mutant with 19.7% increased lactate production and 77.0% enhanced growth under 30 g/L lactate stress. This phenotype was linked to overexpression of ZMOp39x027, a canonical outer membrane autotransporter that promotes lactate transport and cell proliferation under stress. DCP provides a multi-modal phenotyping solution with spatiotemporal precision and scalable throughput, offering a generalizable strategy for accelerated strain engineering and functional gene discovery.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.