Evidence map›Paper›PMID 41072037›Full record

ArticleAmerican journal of respiratory cell and molecular biology2026

Integrated longitudinal transcriptomic and proteomic analysis of the murine lung response to influenza a virus.

Tim Flerlage, David F Boyd, Brandi Clark, Nikhil G Marudai, Shally Saini, Cliff Guy, Kristine Pobre-Piza, Jeremy Chase Crawford, Suresh Poudel, Anthony A High and 6 more

Abstract read
In one paragraph

Article in American journal of respiratory cell and molecular biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Tim FlerlageDepartment of Pediatrics, Division of Pediatric Infectious Diseases, University of Rochester Medical Center, Rochester, NY, United States.
David F BoydDepartment of Molecular, Cell, and Developmental Biology, Division of Physical and Biological Sciences, University of California Santa Cruz, Santa Cruz, CA, United States.
Brandi ClarkDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN, United States.
Nikhil G MarudaiDepartment of Molecular, Cell, and Developmental Biology, Division of Physical and Biological Sciences, University of California Santa Cruz, Santa Cruz, CA, United States.
Shally SainiDepartment of Molecular, Cell, and Developmental Biology, Division of Physical and Biological Sciences, University of California Santa Cruz, Santa Cruz, CA, United States.
Cliff GuyDepartment of Immunology, St Jude Children's Research Hospital, Memphis, TN, United States.
Kristine Pobre-PizaDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN, United States.
Jeremy Chase CrawfordDepartment of Host-Microbe Interactions, St Jude Children's Research Hospital, Memphis, TN, United States.
Suresh PoudelDepartment of Immunology, St Jude Children's Research Hospital, Memphis, TN, United States.
Anthony A HighThe Center for Proteomics and Metabolomics, St Jude Children's Research Hospital, Memphis, TN, United States.
Suiping ZhouThe Center for Proteomics and Metabolomics, St Jude Children's Research Hospital, Memphis, TN, United States.
Xusheng WangDepartment of Neurology, University of Tennessee Health Science Center, Memphis, TN, United States.
Sherri SurmanDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN, United States.
Bart JonesDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN, United States.
Charles W FrevertDeparmtnent of Comparative Medicine, University of Washington, Seattle, WA, United States.
Paul G ThomasVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA, United States.

Funding

NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00018 · NIAID · UNIVERSITY OF GEORGIA · PI TOMPKINS, S. MARK · 2021 to 2025
$21.6M
Impact of versican deficiency on the innate immune response to influenza virusR01AI136468 · NIAID · UNIVERSITY OF WASHINGTON · PI ALTEMEIER, WILLIAM A, FREVERT, CHARLES WAYNE · 2018 to 2022
$3.1M
Understanding and targeting fibroblast activation in influenza-triggered lung inflammation and post-viral diseaseR01HL170121 · NHLBI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI David Fielding Boyd · 2023 to 2026
$2.5M
Center for Influenza Disease and Emergence ResearchNHLBI NIH HHS R01 HL170121NHLBI NIH HHS R01HL170121NIAID NIH HHS R01 AI136468NIH HHS 75N93021C00018ODCDC CDC HHS 75N93021C00018University of Georgia
6 · The paper itself

Abstract

rationaleLung injury caused by influenza is a leading cause of respiratory infection-related morbidity and mortality worldwide. In its severe form, influenza can cause acute respiratory distress syndrome (ARDS), which manifests as severe hypoxemic respiratory failure. Survivors of the acute stage of ARDS may develop lung fibrosis. The mechanisms underlying fibrotic responses in this context are unknown.

objectivesIn this study, we investigate fibroblast responses to influenza challenge.

methodsWe used single cell gene expression (scGEX) and two-dimensional liquid chromatography coupled with tandem/mass spectrometry (TMT-LC/LC-MS/MS) on lung tissue collected longitudinally in a murine model of influenza A virus (IAV) infection. MEASUREMENTS AND MAIN

resultsBy TMT-LC/LC-MS/MS, we identified profound changes in the composition of the lung matrisome, which were most evident 10 days after infection. In this context, we identified transcriptional heterogeneity amongst proximal/adventitial fibroblasts expressing Pi16 and Col15a1 as well as a myofibroblast activation state characterized by expression of Tnc, Spp1, Grem1, and Cthrc1. This activation state was transcriptionally similar to those previously described in other contexts.

conclusionsTogether, these data suggest compartmentalization and conservation of pulmonary fibroblast responses to lung injury of different primary etiologies.

Indexed as

Influenza A virusLungOrthomyxoviridae InfectionsProteomicsTranscriptomeAnimalsDisease Models, AnimalFibroblastsGene Expression ProfilingMiceMice, Inbred C57BLPulmonary Fibrosisfibroblastsfibrosisinfluenza

Identifiers

PMID41072037
PMCPMC13426059

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.