Evidence map›Paper›PMID 41068873›Full record

ArticlePlant methods2025

Implementation of an SfM-MVS-based photogrammetry approach for detailed 3D reconstruction of plants.

Jiří Mach, Zdeněk Svatý, Ondřej Šoupa, Luboš Nouzovský, Martin Halecký

Abstract read
In one paragraph

Article in Plant methods, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jiří MachDepartment of Biotechnology, Faculty of Food and Biochemical Technology, University of Chemistry and Technology in Prague, Technická 5, Prague 6, 166 28, Czech Republic. machi@vscht.cz.
Zdeněk SvatýDepartment of Forensic Experts in Transportation, Faculty of Transportation Sciences, Czech Technical University in Prague, Horská 2040/3, Prague 2, 128 03, Czech Republic.
Ondřej ŠoupaDepartment of Biotechnology, Faculty of Food and Biochemical Technology, University of Chemistry and Technology in Prague, Technická 5, Prague 6, 166 28, Czech Republic.
Luboš NouzovskýDepartment of Forensic Experts in Transportation, Faculty of Transportation Sciences, Czech Technical University in Prague, Horská 2040/3, Prague 2, 128 03, Czech Republic.
Martin HaleckýDepartment of Biotechnology, Faculty of Food and Biochemical Technology, University of Chemistry and Technology in Prague, Technická 5, Prague 6, 166 28, Czech Republic.

Funding

Internal Grant Agency of the University of Chemistry and Technology in Prague A1_FPBT_2025_005
6 · The paper itself

Abstract

In recent years, non-destructive and non-invasive methods for 3D plant reconstruction have gained increasing importance in plant phenotyping. Morphological traits reflect the physiological status of a plant and serve as key indicators for precision agriculture, crop protection, and food quality assessment. Accurate and efficient 3D modelling enables objective and repeatable monitoring of plant development and health, thus supporting data-driven decision-making in agricultural and food research. This study presents a novel, cost-effective, and flexible photogrammetric apparatus for the routine analysis of plant morphological traits under controlled laboratory conditions. Existing systems often rely on expensive instrumentation and provide limited adaptability, whereas the platform described here combines affordability with high precision and robustness. A key innovation is the use of a robotic arm to control an industrial RGB camera, providing substantial flexibility in image acquisition. This mobility ensures comprehensive coverage of plants of different sizes and architectures while minimising occlusions. Another distinctive feature is the implementation of an optimised parameter tweak in the photogrammetric pipeline, which markedly improves the reconstruction of thin and delicate plant parts such as leaves, petioles, and fine stems. In combination with optimised acquisition parameters, including an exposure time of 50 milliseconds, a tweak value of 0.9, and a camera-to-object distance of 16 centimetres, the system achieves consistent model fidelity across diverse plant structures. Efficiency was further enhanced through automation and an optimised scanning procedure. Comparative testing showed that using a larger number of camera positions with fewer frames per position improved throughput, with the best configuration consisting of three height levels and 40 frames each. These improvements reduced the processing time by 75%, decreasing the average scan duration from 8 min to only 2.7 min per plant, while maintaining accuracy and reliability. Overall, the developed apparatus constitutes a reliable and low-cost solution that integrates robotic-assisted flexibility, improved reconstruction through the parameter tweak, and markedly reduced scanning time. The combination of precision, affordability, and efficiency makes the system competitive with existing approaches and, due to its accessibility and detailed methodological description, provides a distinctive contribution to the phenotyping community.

Indexed as

3D reconstructionClose-range photogrammetryMorphological traitsPlant phenotypingPrecision agricultureSfM-MVS-based data processing

Identifiers

PMID41068873
PMCPMC12512472

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.