Evidence map›Paper›PMID 41068278›Full record

ArticleCommunications biology2025

Immediate-early genes Arc and c-Fos show divergent brain-wide expression following contextual fear conditioning.

Nicholas E Bulthuis, Liliette I Quintana, Michelle Stackmann, Christine A Denny

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Nicholas E BulthuisDoctoral Program in Neurobiology and Behavior (NB&B), Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-2367-7992
Liliette I QuintanaDepartment of Neuroscience and Behavior, Barnard College, New York, NY, USA.ORCID http://orcid.org/0000-0003-1480-095X
Michelle StackmannDoctoral Program in Neurobiology and Behavior (NB&B), Columbia University, New York, NY, USA.
Christine A DennyDivision of Systems Neuroscience, Research Foundation for Mental Hygiene, Inc. (RFMH) / New York State Psychiatric Institute (NYSPI), New York, NY, USA. cad2125@cumc.columbia.edu.ORCID http://orcid.org/0000-0002-6926-2020

Funding

NEUROBIOLOGY AND BEHAVIOR RESEARCH TRAINING PROGRAMT32HD007430 · NICHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GRUEBER, WESLEY B · 1999 to 2017
$6.8M
Single-cell and target-specific resolution of multiple memories across the brainR01HD101402 · NICHD · NEW YORK STATE PSYCHIATRIC INSTITUTE DBA RESEARCH FOUNDATION FOR MENTAL HYGIENE, INC · PI DENNY, CHRISTINE ANN, RAMIREZ, STEVE · 2019 to 2023
$3.8M
The impact of Alzheimer's disease on novel genetic signatures of hippocampal memory tracesF31AG090071 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BULTHUIS, NICHOLAS EDWARD · 2024 to 2025
$99k
Generation of a dual transgenic/viral system to characterize multiple engrams in a single mouseF99NS129178 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI STACKMANN, MICHELLE · 2022 to 2023
$96k
Dissecting the role of Arc- and c-fos-expressing neuronal ensembles in fear memoriesF31MH125656 · NIMH · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI STACKMANN, MICHELLE · 2021 to 2021
$41k
National Science Foundation (NSF) DGE 2036197NIA NIH HHS F31 AG090071NICHD NIH HHS R01 HD101402NICHD NIH HHS T32 HD007430NIMH NIH HHS F31 MH125656NINDS NIH HHS F99 NS129178
6 · The paper itself

Abstract

Encoding or retrieving a fear memory induces activity across the entire brain. Neurons involved in these processes are often identified by the expression of immediate-early genes (IEGs), but the extent to which the patterns of this expression correspond between IEGs has not been well characterized. Here, male mice were administered either context exposure (no shock) or 3-shock contextual fear conditioning and euthanized 1 h after encoding, retrieval 1 day later, or retrieval 5 days later. Brain tissue was immunostained for Arc and c-Fos protein, and expression was quantified across several brain regions. We find that expression of the two IEGs substantially diverges, with fewer than 50% of total labeled cells expressing both markers across memory states. Furthermore, memory state broadly influences Arc

Indexed as

Conditioning, PsychologicalCytoskeletal ProteinsFearNerve Tissue ProteinsProto-Oncogene Proteins c-fosAnimalsBasolateral Nuclear ComplexGene ExpressionGenes, Immediate-EarlyGyrus CinguliHabenulaHippocampusMaleMemoryMiceMice, 129 Strainactivity regulated cytoskeletal-associated proteinCytoskeletal ProteinsNerve Tissue ProteinsProto-Oncogene Proteins c-fos

Identifiers

PMID41068278
PMCPMC12511597

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.