Evidence map›Paper›PMID 41068120›Full record

ArticleNature communications2025

PBAF/cBAF reorganization on H3.3 chromatin regulates BMAL1 activity in the absence of circadian negative feedback.

Dominika Letkova, Aurelie Peticca, Damien Sery, Masahide Seki, Yutaka Suzuki, Kiran Padmanabhan

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Dominika LetkovaInstitut de Génomique Fonctionnelle de Lyon, Univ Lyon, CNRS UMR 5242, Ecole Normale Supérieure de Lyon, Université Claude Bernard Lyon, Lyon, France.ORCID http://orcid.org/0009-0002-6240-1734
Aurelie PeticcaInstitut de Génomique Fonctionnelle de Lyon, Univ Lyon, CNRS UMR 5242, Ecole Normale Supérieure de Lyon, Université Claude Bernard Lyon, Lyon, France.ORCID http://orcid.org/0000-0002-8972-0973
Damien SeryInstitut de Génomique Fonctionnelle de Lyon, Univ Lyon, CNRS UMR 5242, Ecole Normale Supérieure de Lyon, Université Claude Bernard Lyon, Lyon, France.
Masahide SekiGraduate School of Frontier Sciences, The University of Tokyo, Chiba, Japan.ORCID http://orcid.org/0000-0001-6091-8698
Yutaka SuzukiGraduate School of Frontier Sciences, The University of Tokyo, Chiba, Japan.ORCID http://orcid.org/0000-0003-4852-1879
Kiran PadmanabhanInstitut de Génomique Fonctionnelle de Lyon, Univ Lyon, CNRS UMR 5242, Ecole Normale Supérieure de Lyon, Université Claude Bernard Lyon, Lyon, France. kiran.padmanabhan@ens-lyon.fr.ORCID http://orcid.org/0000-0001-7020-1682

Funding

Agence Nationale de la Recherche (French National Research Agency) ANR-20-CE12-0013EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 101016726Japan Agency for Medical Research and Development (AMED) JP23jf0126003Japan Agency for Medical Research and Development (AMED) JP25jf0126017
6 · The paper itself

Abstract

Circadian rhythms in gene expression are coincident with 24 hr dynamics in the recruitment of the core-clock transcription factor heterodimer CLOCK-BMAL1 to chromatin. In the liver, circadian chromatin is characterized by rhythmic histone modifications and the deposition of histone variant H2A.Z. However, other histone variants and remodelers that work in conjunction with CLOCK-BMAL1 on variant chromatin remain poorly understood. Here, we reveal that H3.3 variant histone deposition peaks during the daytime in liver chromatin and that CLOCK-BMAL1 is recruited to H3.3 nucleosomes. Moreover, H3.3:CLOCK-BMAL1 associates with PBAF and BRG1/cBAF complexes - members of the SWI/SNF remodeler family - only during the active phase of the circadian cycle. In clock-disrupted Per1

Indexed as

ARNTL Transcription FactorsChromatinCircadian RhythmHistonesNuclear ProteinsTranscription FactorsAnimalsChromatin Assembly and DisassemblyCLOCK ProteinsDNA-Binding ProteinsDNA HelicasesFeedback, PhysiologicalHumansLiverMaleMiceARNTL Transcription FactorsBmal1 protein, mouseChromatinClock protein, mouseCLOCK ProteinsDNA-Binding ProteinsDNA HelicasesHistonesNuclear ProteinsNucleosomesPer2 protein, mousePeriod Circadian ProteinsSmarca4 protein, mouseTranscription Factors

Identifiers

PMID41068120
PMCPMC12511354

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.