Evidence map›Paper›PMID 41068108›Full record

ArticleNature communications2025

ZMYND11 functions in bimodal regulation of latent genes and brain-like splicing to safeguard corticogenesis.

Xuyao Chang, Wenqi Li, Satoshi Matsui, Cindy Huynh, Craig Erickson, Feng Guo, Gustav Y Cederquist, Lorenz Studer, Makiko Iwafuchi, Amelle Shillington and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. ZMYND11 Restrains KMT2A to Enable a Neuronal Developmental Program.bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Xuyao ChangDivision of Developmental Biology and the Center for Stem Cell and Organoid Medicine (CuSTOM), Cincinnati Children's Hospital Medical Center, Cincinnati, USA.
Wenqi LiDepartment of Pediatrics, University of Texas Southwestern Medical Center and Children's Medical Center Dallas, Dallas, USA.
Satoshi MatsuiDivision of Developmental Biology and the Center for Stem Cell and Organoid Medicine (CuSTOM), Cincinnati Children's Hospital Medical Center, Cincinnati, USA.
Cindy HuynhDivision of Developmental Biology and the Center for Stem Cell and Organoid Medicine (CuSTOM), Cincinnati Children's Hospital Medical Center, Cincinnati, USA.ORCID http://orcid.org/0000-0001-8487-3076
Craig EricksonDivision of Child and Adolescent Psychiatry, Cincinnati Children's Hospital Medical Center, Cincinnati, USA.
Feng GuoDepartment of Intelligent Systems Engineering, Indiana University Bloomington, Bloomington, USA.ORCID http://orcid.org/0000-0001-9103-3235
Gustav Y CederquistDevelopmental Biology and Center for Stem Cell Biology, Memorial Sloan Kettering Cancer Center, New York, USA.
Lorenz StuderDevelopmental Biology and Center for Stem Cell Biology, Memorial Sloan Kettering Cancer Center, New York, USA.ORCID http://orcid.org/0000-0003-0741-7987
Makiko IwafuchiDivision of Developmental Biology and the Center for Stem Cell and Organoid Medicine (CuSTOM), Cincinnati Children's Hospital Medical Center, Cincinnati, USA.ORCID http://orcid.org/0000-0003-1291-6246
Amelle ShillingtonDepartment of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, USA.
Constantinos ChronisDepartment of Biochemistry and Molecular Genetics, University of Illinois College of Medicine, Chicago, USA.
Jason TchieuDivision of Developmental Biology and the Center for Stem Cell and Organoid Medicine (CuSTOM), Cincinnati Children's Hospital Medical Center, Cincinnati, USA. jason.tchieu@cchmc.org.ORCID http://orcid.org/0000-0002-9793-9836

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Elisa de Stanchina · 1985 to 2026
$347.4M
Dynamic regulation of lineage-specific Polycomb repressive landscapes by pioneer and PRDM transcription factorsR01GM143161 · NIGMS · CINCINNATI CHILDRENS HOSP MED CTR · PI Makiko IWAFUCHI · 2022 to 2026
$1.7M
Memorial Sloan-Kettering Cancer Center (MSKCC) P30CA008748NCI NIH HHS P30 CA008748NIGMS NIH HHS R01 GM143161Starr Foundation Tri-SCI-2023-013U.S. Department of Defense (United States Department of Defense) W81XWH-22-1-0533U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01GM143161
6 · The paper itself

Abstract

Despite the numerous pathogenic variants linked to neurodevelopmental disorders (NDDs) including autism (ASD) and intellectual disability, our understanding of the underlying mechanisms caused by risk genes remain unclear. Here, we show that mutations in ZMYND11, a newly implicated risk gene, impair human cortical progenitor and neuron production. ZMYND11, known for its tumor suppressor function, encodes a histone-reader that recognizes sites of transcriptional elongation and acts as a co-repressor. ZMYND11-deficient cortical neural stem cells upregulate inappropriate developmental pathways, leading to disrupted neurogenesis. In addition to its role on chromatin, ZMYND11 regulates a brain-specific RNA isoform switch involving the splicing regulator RBFOX2. Similar defects are observed in other chromatin-related ASD risk genes, some of which are partially rescued by enhancing ZMYND11 function. These findings uncover convergent pathways linking chromatin regulation and splicing to human brain development and advance our understanding of how genetic risk contributes to NDD.

Indexed as

BrainCerebral CortexNeurogenesisTumor Suppressor ProteinsAnimalsCell Cycle ProteinsChromatinCo-Repressor ProteinsDNA-Binding ProteinsGene Expression Regulation, DevelopmentalHumansMiceMutationNeural Stem CellsNeuronsRepressor ProteinsCell Cycle ProteinsChromatinCo-Repressor ProteinsDNA-Binding ProteinsRBFOX2 protein, humanRepressor ProteinsRNA Splicing FactorsTumor Suppressor ProteinsZMYND11 protein, human

Identifiers

PMID41068108
PMCPMC12511308

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.