Evidence map›Paper›PMID 41068096›Full record

ArticleNPJ biofilms and microbiomes2025

Fusobacterium lineage profiling facilitates the clarification of the associations between non-nucleatum Fusobacterium and colorectal cancer.

Yuli Wu, Guo Ji, Dongyan Han, Youhua Zhang, Xingchen Zhu, Hao Li, Man Li, Yaohui Gao, Ruting Xie, Min Xu and 5 more

Abstract read
In one paragraph

Article in NPJ biofilms and microbiomes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Yuli Wu *Department of Pathology, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China.
Guo Ji *Department of Pathology, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China.
Dongyan Han *Department of Pathology, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China.
Youhua ZhangDepartment of Pathology, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China.
Xingchen ZhuDepartment of Pathology, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China.
Hao LiDepartment of Gastrointestinal Surgery, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China.
Man LiDepartment of Pathology, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China.
Yaohui GaoDepartment of Pathology, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China.
Ruting XieDepartment of Pathology, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China.
Min XuTianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China.
Ling LuDepartment of Pathology, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China.
Zixin DengTianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China.
Qing WeiDepartment of Pathology, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China. weiqing1971@tongji.edu.cn.
Huanlong QinDepartment of Gastrointestinal Surgery, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China. qinhuanlong@tongji.edu.cn.
Dexi BiDepartment of Pathology, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China. bidexi@tongji.edu.cn.

Funding

Major Projects of Special Development Funds in Zhangjiang National Independent Innovation Demonstration Zone, Shanghai ZJ2022-ZD-005National Natural Science Foundation of China 82072236National Natural Science Foundation of China 82072634Shanghai Municipal Hospital Development Center SHDC2020CR2069B
6 · The paper itself

Abstract

Non-nucleatum Fusobacterium may play a nonnegligible role in colorectal cancer (CRC) and certain Fusobacterium lineages (namely, L1 and L5) have shown specific associations with CRC. We aim to clarify the complex connections between Fusobacterium and CRC. We found that the widely adopted quantitative PCR (qPCR) method could overestimate F. nucleatum abundance and, in fact, reflect L1 levels in clinical samples. A lineage-specific qPCR assay targeting L1/L5 was developed and validated using mock and clinical samples. Its application in independent cohorts confirmed that L1 was overabundant in CRC, whereas L5 correlated with lymphovascular invasion. Importantly, faecal L1 abundance was more predictive of CRC than F. nucleatum, supported also by cross-population metagenomic data. CRC-associated virulence and colonisation genes were found in various L1 species other than F. nucleatum. Our results highlight the clinical importance of L1/L5 in CRC with high-diversity Fusobacterium contexts and suggest that non-nucleatum Fusobacterium may also contribute to CRC.

Indexed as

Colorectal NeoplasmsFusobacteriumFusobacterium InfectionsAgedFecesFemaleFusobacterium nucleatumHumansMaleMetagenomicsMiddle AgedReal-Time Polymerase Chain Reaction

Identifiers

PMID41068096
PMCPMC12511565

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.