Evidence map›Paper›PMID 41066695›Full record

ArticleBriefings in bioinformatics2025

Disentangled contrastive learning with dynamic intent adaptation for unveiling gene-drug associations.

Xiaosong Wang, Yudong Liu, Qingyong Wang, Lichuan Gu

Abstract read
In one paragraph

Article in Briefings in bioinformatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Interpretable Multimodal Molecular Language Model for Drug-Target Interaction Prediction.Interdisciplinary sciences, computational life sciences · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Xiaosong WangSchool of Information and Artificial Intelligence, Anhui Agricultural University, 130, Changjiang West Road, Hefei, Anhui Province 230036, China.ORCID 0000-0002-9733-2030
Yudong LiuSchool of Information and Artificial Intelligence, Anhui Agricultural University, 130, Changjiang West Road, Hefei, Anhui Province 230036, China.
Qingyong WangSchool of Information and Artificial Intelligence, Anhui Agricultural University, 130, Changjiang West Road, Hefei, Anhui Province 230036, China.
Lichuan GuSchool of Information and Artificial Intelligence, Anhui Agricultural University, 130, Changjiang West Road, Hefei, Anhui Province 230036, China.

Funding

National Key Research and Development Program 2023YFD1802200National Natural Science Foundation of China 32472007National Natural Science Foundation of China 62301006Natural Science Foundation of Anhui Province 2308085MF217Natural Science Foundation of Anhui Province 2308085QF202Natural Science Research Project of Education Department of Anhui Province of China 2023AH051020University Synergy Innovation Program of Anhui Province GXXT-2022-046
6 · The paper itself

Abstract

Understanding gene-drug associations is essential in drug discovery, where advances in artificial intelligence and data-driven methods have revolutionized the identification of novel therapeutic applications, molecular pathways, and potential drug targets for existing medications. However, current computational methods are hindered by data sparsity and limited capacity to model the complex interactions between genes and drugs. To address these challenges, we propose a novel computational framework-disentangled contrastive learning with dynamic intent adaptation (DIACL)-for predicting unknown gene-drug associations. DIACL leverages disentangled contrastive learning to decompose the latent factors driving drug-gene interactions, yielding more robust and interpretable feature representations. Additionally, we introduce a dynamic intent representation mechanism and an adaptation graph augmentation strategy to enhance the model's ability to capture fine-grained interaction details. Extensive experiments on benchmark datasets demonstrate that DIACL significantly outperforms state-of-the-art methods in terms of prediction accuracy and generalization capability. Our findings highlight DIACL's potential as a scalable and efficient tool for accelerating drug discovery and advancing precision medicine by identifying therapeutic targets.

Indexed as

Computational BiologyDrug DiscoveryMachine LearningAlgorithmsHumanscontrastive learningdisentangled representation learninggene–drug associationgraph neural networks

Identifiers

PMID41066695
PMCPMC12510405

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.