Evidence map›Paper›PMID 41066396›Full record

ArticlePloS one2025

Evaluating the pentapharmacological potency of otamixaban against lung cancer CDK2, transferase, oxidoreductase and signalling proteins.

Hanadi M Baeissa, Tahani Bakhsh, Afnan Mohammed Shakoori, Ghadir Sindi, Randa Mohammed Zaki, Mohammad Azhar Kamal, Hadeel A Alsufyani, Alaa Hamed Habib, Arwa Ishaq A Khayyat, Misbahuddin Rafeeq and 1 more

Erratum issuedAbstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Hanadi M BaeissaDepartment of Biological Sciences, College of Science, University of Jeddah, Jeddah, Saudi Arabia.
Tahani BakhshDepartment of Biological Sciences, College of Science, University of Jeddah, Jeddah, Saudi Arabia.
Afnan Mohammed ShakooriDepartment of Clinical Laboratory Sciences, Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah, Kingdom of Saudi Arabia.
Ghadir SindiDepartment of Clinical Laboratory Sciences, Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah, Kingdom of Saudi Arabia.
Randa Mohammed ZakiDepartment of Pharmaceutics, College of Pharmacy, Prince Sattam Bin Abdulaziz University, Al-Kharj, Saudi Arabia.ORCID https://orcid.org/0000-0002-6145-4837
Mohammad Azhar KamalDepartment of Pharmaceutics, College of Pharmacy, Prince Sattam Bin Abdulaziz University, Al-Kharj, Saudi Arabia.ORCID https://orcid.org/0000-0002-0180-3441
Hadeel A AlsufyaniChair of Clinical Physiology Department, Medical College, King Abdulaziz University, Jeddah, Saudi Arabia.
Alaa Hamed HabibDepartment of Physiology, Faculty of Medicine, King Abdulaziz University, Jeddah, Saudi Arabia.
Arwa Ishaq A KhayyatDepartment of Biochemistry, College of Science, King Saud University, Riyadh, Saudi Arabia.
Misbahuddin RafeeqDepartment of Pharmacology, Basic Medical Sciences Division, College of Medicine, Dhofar University, Salalah, Oman.
Deeba Shamim JairajpuriDepartment of Medical Biochemistry, College of Medicine and Health Sciences, Arabian Gulf University, Manama, Kingdom of Bahrain.ORCID https://orcid.org/0000-0002-2499-3700

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lung cancer remains the leading cause of cancer-related mortality worldwide. With approximately 2.2 million new cases and 1.8 million deaths annually, it contributes to 18% of all cancer fatalities. The high mortality rate, limited accessibility to affordable treatments, and the emergence of drug resistance necessitated the development of novel therapeutic strategies. In this study, we employed an HTVS, SP and XP-based molecular docking and MM/GBSA calculations to identify a potential multitargeted drug candidate from the DrugBank library against five key (Penta) lung cancer-associated proteins, including CDK2 (1AQ1), Transferase(1JWH, 1K3A), Oxidoreductase (4XZL) and Signalling (2DVJ) enzymes that led to the identification of Otamixaban, exhibiting favourable docking and MM/GBSA scores ranging from -11.841 to -6.52, and -69.96 to -45.22 kcal/mol. Molecular Interaction Fingerprints analysis was performed to gain deeper insights into its binding interactions that reveal key residues with high interaction frequencies, including 12VAL, 8LEU, 7PHE, 6LYS, 5ASP, 5GLN, and 5GLU. Pharmacokinetic evaluations confirmed drug-likeness, and its ADMET properties were consistent with standard drug approval benchmarks, QM computations using DFT further reinforced the stability and reactivity of the identified compound. The thermodynamic role of water molecules in ligand binding was assessed through 5 ns WaterMap analysis, supporting the hypothesis that Otamixaban effectively interacts with the binding pockets of multiple target proteins. Further, a 100-ns MD simulation was conducted to ensure the stability and efficacy of the drug candidate under physiological conditions in an explicit TIP3P water environment. The results demonstrated minimal structural deviations and fluctuations, with strong intermolecular interactions persisting throughout the simulation. Further evaluation of 1000 simulation frames from trajectories provided comprehensive insights into the total complex energy and binding free energy via MM/GBSA calculations, reinforcing the potential of Otamixaban as a robust multitargeted drug candidate. Despite these promising computational findings, experimental validation through in vitro and in vivo studies is crucial to confirm its therapeutic efficacy and clinical viability.

Indexed as

Antineoplastic AgentsCyclin-Dependent Kinase 2Lung NeoplasmsPyridinesHumansMolecular Docking SimulationMolecular Dynamics SimulationProtein BindingSignal TransductionAntineoplastic AgentsCDK2 protein, humanCyclin-Dependent Kinase 2Pyridines

Identifiers

PMID41066396
PMCPMC12510531

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.