Evidence map›Paper›PMID 41064766›Full record

ReviewFrontiers in plant science2025

From map to blueprint: the plant pan-genome unraveling genetic mysteries and powering precision breeding.

Chong Liu, Hang Xu, Zheng Li, Yukun Wang, Jiaxian Zhang, Siwei Qiao, Hao Zhang

Abstract readReview
In one paragraph

Review in Frontiers in plant science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Structural Variation and Its Roles in Plant Genomes.Plants (Basel, Switzerland) · 2026
    Review
  4. Recent Advances inBiology · 2026
    Review
  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Chong LiuInstitute of Special Animal and Plant Sciences, Chinese Academy of Agricultural Sciences, Changchun, China.
Hang XuInstitute of Special Animal and Plant Sciences, Chinese Academy of Agricultural Sciences, Changchun, China.
Zheng LiInstitute of Special Animal and Plant Sciences, Chinese Academy of Agricultural Sciences, Changchun, China.
Yukun WangInstitute of Special Animal and Plant Sciences, Chinese Academy of Agricultural Sciences, Changchun, China.
Jiaxian ZhangInstitute of Special Animal and Plant Sciences, Chinese Academy of Agricultural Sciences, Changchun, China.
Siwei QiaoInstitute of Special Animal and Plant Sciences, Chinese Academy of Agricultural Sciences, Changchun, China.
Hao ZhangInstitute of Special Animal and Plant Sciences, Chinese Academy of Agricultural Sciences, Changchun, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

With the rapid advancement of sequencing technologies and bioinformatics, coupled with significant progress in sequencing efficiency and reduced costs, substantial breakthroughs have been achieved in plant functional genomics, evolutionary genetics, and molecular breeding. However, as research deepens, accumulating evidence demonstrates that reference genomes derived from a single individual fail to adequately represent the genetic diversity of entire species. This limitation has catalyzed the emergence of the pan-genome concept. Pan-genome research now stands at the forefront of plant genomics, serving as a pivotal area of focus. Its application in plant studies has unveiled extensive genetic variations, identified numerous novel genes, and significantly enhanced our understanding of genetic diversity within relevant species. This review comprehensively summarizes recent progress in plant pan-genome research, construction methodologies, current applications in plant science, and key achievements. Finally, we outline future research directions, aiming to provide a reference for theoretical and applied pan-genome studies while offering novel perspectives for deciphering the genetic basis of plant breeding, evolutionary domestication, and phenotypic diversity.

Indexed as

genetic variationgenome assemblyplant breedingplant pan-genomesequencing technology

Identifiers

PMID41064766
PMCPMC12501790

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.