Evidence map›Paper›PMID 41063454›Full record

ArticleBiophysical journal2026

Modeling mechanochemical coupling in optogenetically activated cell layers.

Dennis Wörthmüller, Falko Ziebert, Ulrich S Schwarz

Abstract read
In one paragraph

Article in Biophysical journal, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Computational models in directed cell migration.Frontiers in cell and developmental biology · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Dennis WörthmüllerInstitut Curie, Universite PSL, Sorbonne Universite, CNRS UMR168, Physique des Cellules et Cancer, Paris, France.
Falko ZiebertInstitute for Theoretical Physics, Heidelberg University, Heidelberg, Germany; BioQuant-Center for Quantitative Biology, Heidelberg University, Heidelberg, Germany.
Ulrich S SchwarzInstitute for Theoretical Physics, Heidelberg University, Heidelberg, Germany; BioQuant-Center for Quantitative Biology, Heidelberg University, Heidelberg, Germany. Electronic address: schwarz@thphys.uni-heidelberg.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In adherent cells, actomyosin contractility is regulated mainly by the RhoA signaling pathway, which can be controlled by optogenetics. To model the mechanochemical coupling in such systems, we introduce a finite element framework based on the discontinuous Galerkin method, which allows us to treat cell doublets, chains of cells, and monolayers within the same conceptual framework. While the adherent cell layer is modeled as an actively contracting viscoelastic solid on an elastic foundation, different models are considered for the Rho pathway, starting with a simple linear chain that can be solved analytically and later including direct feedback that can be solved only numerically. Our model predicts signal propagation as a function of coupling strength and viscoelastic timescales and identifies the conditions for optimal cell responses and wave propagation. In general, it provides a systematic understanding of how biochemistry and mechanics simultaneously contribute to the communication of adherent cells.

Indexed as

Mechanical PhenomenaModels, BiologicalOptogeneticsAnimalsBiomechanical PhenomenaCell AdhesionElasticityrhoA GTP-Binding ProteinrhoA GTP-Binding Protein

Identifiers

PMID41063454
PMCPMC13507329

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.