Evidence map›Paper›PMID 41063346›Full record

ArticleNucleic acids research2025

KAT5-mediated acetylation of PC4 facilitates DNA repair by promoting chromatin reorganization.

Aayushi Agrawal, Sweta Sikder, Siddharth Singh, Rakesh Kumar Sharma, Nikhil Pallaprolu, Kalyan Mitra, Sourav Mondal, Rupa Mukhopadhyay, Jayanta Sarkar, Ramalingam Peraman and 2 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Aayushi AgrawalDivision of Cancer Biology, CSIR-Central Drug Research Institute (CDRI), Lucknow 226031, India.
Sweta SikderTranscription and Disease Laboratory, Molecular Biology and Genetics Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, Karnataka-560064, India.
Siddharth SinghTranscription and Disease Laboratory, Molecular Biology and Genetics Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, Karnataka-560064, India.
Rakesh Kumar SharmaAcademy of Scientific and Innovative Research (AcSIR), Ghaziabad-201002, India.
Nikhil PallaproluDepartment of Pharmaceutical Analysis, National Institute of Pharmaceutical Education and Research (NIPER)- Hajipur, Bihar 844402, India.
Kalyan MitraAcademy of Scientific and Innovative Research (AcSIR), Ghaziabad-201002, India.ORCID 0000-0002-7252-1716
Sourav MondalSchool of Biological Sciences, Indian Association for the Cultivation of Science, Kolkata, West Bengal-700032, India.
Rupa MukhopadhyaySchool of Biological Sciences, Indian Association for the Cultivation of Science, Kolkata, West Bengal-700032, India.ORCID 0000-0002-6753-079X
Jayanta SarkarDivision of Cancer Biology, CSIR-Central Drug Research Institute (CDRI), Lucknow 226031, India.
Ramalingam PeramanDepartment of Pharmaceutical Analysis, National Institute of Pharmaceutical Education and Research (NIPER)- Hajipur, Bihar 844402, India.
V RavichandiranDepartment of Pharmaceutical Analysis, National Institute of Pharmaceutical Education and Research (NIPER)- Hajipur, Bihar 844402, India.
Tapas K KunduTranscription and Disease Laboratory, Molecular Biology and Genetics Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, Karnataka-560064, India.ORCID 0000-0001-7790-214X

Funding

Council of Scientific & Industrial ResearchDepartment of Science and Technology JBR/2020/000029J C Bose FellowshipJNCASR BT/01/CEIB/10/III/01SERB SPR/2021/000338
6 · The paper itself

Abstract

Human positive coactivator 4 (PC4) is a highly abundant non-histone chromatin protein involved in diverse cellular processes, including transcription regulation, genome organization, autophagy, B-cell differentiation, neurogenesis, DNA repair, etc. Most PC4 is phosphorylated in cells, which interacts with core histones and the linker histone H1 to confer the compact heterochromatin state of the genome. Knocking down PC4 at both cellular and organismal levels leads to significant chromatin decondensation, altered epigenetic landscape, enhanced autophagy, and increased DNA damage susceptibility. Here, we report that besides p300, PC4 also gets acetylated by DNA repair, facilitating lysine acetyltransferase KAT5 (Tip60) at a specific lysine residue (PC4K80) when the cells are subjected to DNA damage. The vulnerability of DNA in PC4 devoid cells was substantially reduced by reintroducing wild-type PC4 to the cells but not the mutant PC4 (PC4K80R), defective in KAT5-mediated acetylation. High-resolution microscopy techniques, including transmission electron microscopy and atomic force microscopy, are employed to visualize chromatin structural changes in response to DNA damage and repair in a Tip60-mediated PC4 acetylation-dependent manner. Presumably, KAT5-mediated acetylation of PC4 at K80 residue facilitates access to the damaged DNA by altering chromatin structures at damage sites, thus promoting DNA repair. This process could be highly significant both in cancer and in aging.

Indexed as

Chromatin Assembly and DisassemblyDNA-Binding ProteinsDNA RepairLysine Acetyltransferase 5Transcription FactorsAcetylationDNA DamageHEK293 CellsHumansLysineMutationDNA-Binding ProteinsKAT5 protein, humanLysineLysine Acetyltransferase 5SUB1 protein, humanTranscription Factors

Identifiers

PMID41063346
PMCPMC12507519

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.