Evidence map›Paper›PMID 41063129›Full record

ArticleMalaria journal2025

The mitochondrial genome sequence of the Bornean orang-utan (Pongo pygmaeus) malaria parasite, Plasmodium pitheci.

Anik Budhi Dharmayanthi, Rahadian Pratama, Karmele Llano Sánchez, Andini Nurillah, Fina Fadiah, Komara, R Taufiq Purna Nugraha, Sugiyono Saputra, Arif Nurkanto, Agus Fahroni and 7 more

Erratum issuedAbstract read
In one paragraph

Article in Malaria journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Anik Budhi DharmayanthiResearch Center for Biosystematics and Evolution, National Research and Innovation Agency, KST (HC) Soekarno, Cibinong Bogor, 16911, Indonesia.
Rahadian PratamaCenter for Biomedical Research, National Research and Innovation Agency, KST (HC) Soekarno, Cibinong Bogor, 16911, Indonesia.
Karmele Llano SánchezIAR Indonesia Foundation-Yayasan Inisiasi Alam Rehabilitasi Indonesia (YIARI), Ketapang, West Kalimantan, Indonesia. karmele@yiari.or.id.
Andini NurillahIAR Indonesia Foundation-Yayasan Inisiasi Alam Rehabilitasi Indonesia (YIARI), Ketapang, West Kalimantan, Indonesia.
Fina FadiahIAR Indonesia Foundation-Yayasan Inisiasi Alam Rehabilitasi Indonesia (YIARI), Ketapang, West Kalimantan, Indonesia.
KomaraIAR Indonesia Foundation-Yayasan Inisiasi Alam Rehabilitasi Indonesia (YIARI), Ketapang, West Kalimantan, Indonesia.
R Taufiq Purna NugrahaResearch Center for Applied Zoology, National Research and Innovation Agency, KST (HC) Soekarno, Cibinong Bogor, 16911, Indonesia.
Sugiyono SaputraResearch Center for Applied Microbiology, National Research and Innovation Agency, KST (HC) Soekarno, Cibinong Bogor, 16911, Indonesia.
Arif NurkantoResearch Center for Biosystematics and Evolution, National Research and Innovation Agency, KST (HC) Soekarno, Cibinong Bogor, 16911, Indonesia.
Agus FahroniThe Borneo Orangutan Survival Foundation, Nyaru Menteng Orangutan Reintroduction Centre, Palangkaraya, Indonesia.
Agus IrwantoThe Borneo Orangutan Survival Foundation, Samboja Lestari Orangutan Reintroduction Centre, Kutai Kertanegara, East Kalimantan, Indonesia.
Din SyafruddinEijkman Research Center for Molecular Biology, National Research and Innovation Agency (BRIN), Cibinong, Indonesia.
Iskandar Alisyahbana AdnanEijkman Research Center for Molecular Biology, National Research and Innovation Agency (BRIN), Cibinong, Indonesia.
Jessica R SaragihMasters Program in Biomedical Science, Faculty of Medicine, Public Health, and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia.
Farah Novita CoutrierEijkman Research Center for Molecular Biology, National Research and Innovation Agency (BRIN), Cibinong, Indonesia.
Wuryantari SetiadiEijkman Research Center for Molecular Biology, National Research and Innovation Agency (BRIN), Cibinong, Indonesia.
Neil F LoboEck Institute for Global Health, University of Notre Dame, Notre Dame, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study presents the complete mitochondrial genome sequence of Plasmodium pitheci, a malaria parasite that infects Bornean orang-utans (Pongo pygmaeus). The mitochondrial genome spans 5871 bp in length encoding all essential mitochondrial genes in a conserved arrangement typical of Plasmodium species. Using Bayesian phylogenetic analyses, the evolutionary relationships of P. pitheci with other Plasmodium species that infect non-human primates were investigated. Findings of this study confirm that the previously identified Plasmodium sp. VM and VS and Plasmodium sp. Pongo clade A and clade B from orang-utans correspond to P. pitheci. However, the taxonomic classification of Plasmodium sp. Pongo clade C remains unresolved. The detection of P. pitheci infections in orang-utans across Borneo provides insights into the parasite's geographic distribution. This genomic information contributes to a deeper understanding of P. pitheci and its evolutionary relationship with other malaria parasites. Comparative genomics with other Plasmodium species, including those infecting humans, will deepen the general understanding of malaria's evolutionary pathways. Furthermore, the availability of the complete mitochondrial genome of this parasite provides a foundation for developing species-specific molecular diagnostic tools. These tools will improve malaria diagnosis in orang-utans, assist in conservation efforts, and potentially aid in zoonotic malaria control strategies for humans in regions where cross-species transmission is a concern.

Indexed as

Genome, MitochondrialMalariaPlasmodiumPongo pygmaeusAnimalsBorneoPhylogenyOrangutan conservationPlasmodium full mitochondrial genomePlasmodium pitheciPrimate malarias

Identifiers

PMID41063129
PMCPMC12505591

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.