Evidence map›Paper›PMID 41062954›Full record

ArticleBMC infectious diseases2025

Bioinformatics analysis of the proteome in the pathway of complement and coagulation cascades in COVID-19: discovering potential biomarkers of FGB and SERPINA5.

Siyuan Liu, Huichun Shi, Yuexiang Yang, Cuisong Zhu, Jing Zhou, Wenzhong Jin, Shu Song, Lijun Zhang

Abstract read
In one paragraph

Article in BMC infectious diseases, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

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3citing papers in PubMed
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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Siyuan Liu *Shanghai Ninth People's Hospital, Shanghai Jiaotong University School of Medicine, Shanghai, 200011, China.
Huichun Shi *Shanghai Institute of Infectious Disease and Biosecurity, Fudan University, Shanghai, China.
Yuexiang Yang *Shanghai Public Health Clinical Center, Fudan University, Shanghai, 201508, China.
Cuisong ZhuShanghai Public Health Clinical Center, Fudan University, Shanghai, 201508, China.
Jing ZhouShanghai Public Health Clinical Center, Fudan University, Shanghai, 201508, China.
Wenzhong JinShanghai Ninth People's Hospital, Shanghai Jiaotong University School of Medicine, Shanghai, 200011, China. mitenike@sjtu.edu.cn.
Shu SongShanghai Public Health Clinical Center, Fudan University, Shanghai, 201508, China. songshu@shaphc.org.
Lijun ZhangShanghai Public Health Clinical Center, Fudan University, Shanghai, 201508, China. zhanglijun@shaphc.org.

Funding

Science and Technology Plan Project of Zhejiang Province 2022C03189Shanghai Public Health Clinical Center (Grant KY-GW-2024-05) KY-GW-2024-05
6 · The paper itself

Abstract

The complement system, a key innate immunity component, is implicated in COVID-19 pathogenesis. Proteomic studies reveal dysregulated complement and coagulation cascades (CCC) proteins in COVID-19, yet comprehensive analyses remain limited. This bioinformatics study analyzed proteomic data (from inception to January 13, 2025) across Web of Science, PubMed, EMBASE, and Wiley Online Library using keywords "complement and coagulation cascades", "COVID-19", and "proteomics". Included studies compared differentially expressed proteins (DEPs) in COVID-19 patients versus healthy controls. Two reviewers independently extracted data. DEPs were analyzed via R (v4.4.2), Stata (v14), and STRING (v12.0). Twenty studies identified 3,018 DEPs, including 58 CCC-related genes (e.g., FGB, SERPINA5, FGG, F2). Hub genes were identified using MCODE and cytohubba in Cytoscape, and 16 hub genes (e.g., FGB, SERPINA5) were found. Stata confirmed consistent expression of FGB, SERPINA5, FGG, and F2. All of them are the biomarkers of diseases, and are the drug targets except SERPINA5 according to the reports from OpenTargets database. Immunohistochemistry validated FGB upregulation and SERPINA5 downregulation. In summary, CCC pathway proteins are extensively dysregulated in COVID-19. FGB and SERPINA5 are potential diagnostic biomarkers and therapeutic targets, offering insights into severe COVID-19 mechanisms and guiding novel treatment strategies.

Indexed as

Blood CoagulationComplement System ProteinsCOVID-19KininogensProteomeBiomarkersComputational BiologyHumansProtein C InhibitorProtein Interaction MapsProteomicsSARS-CoV-2BiomarkersComplement System ProteinsKininogensProtein C InhibitorProteomeSERPINA5 protein, humanComplement and coagulation cascadesCOVID-19FGBProteomicsSERPINA5

Identifiers

PMID41062954
PMCPMC12506357

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.