Evidence map›Paper›PMID 41062543›Full record

ArticleScientific reports2025

Associations of the intestinal microbiota with plasma bile acids and inflammation markers in Crohn's disease and ulcerative colitis.

Stefanie Prast-Nielsen, Anna Löf Granström, Ali Kiasat, Gustav Ahlström, Gabriella Edfeldt, Susanne Rautiainen, Fredrik Boulund, Fredrik O Andersson, Johan Lindberg, Ina Schuppe-Koistinen and 2 more

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Stefanie Prast-NielsenCentre for Translational Microbiome Research, Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Solna, Sweden.ORCID http://orcid.org/0000-0001-5877-7988
Anna Löf GranströmDepartment of Clinical Sciences, Danderyd Hospital, Karolinska Institutet, Stockholm, Sweden.ORCID http://orcid.org/0000-0003-2169-7399
Ali KiasatDepartment of Clinical Sciences, Danderyd Hospital, Karolinska Institutet, Stockholm, Sweden.ORCID http://orcid.org/0000-0001-5568-3265
Gustav AhlströmCentre for Translational Microbiome Research, Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Solna, Sweden.
Gabriella EdfeldtCentre for Translational Microbiome Research, Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Solna, Sweden.ORCID http://orcid.org/0000-0003-0366-5588
Susanne RautiainenGlobal and Sexual Health Research Group, Department of Global Public Health, Karolinska Institutet, Stockholm, Sweden.ORCID http://orcid.org/0000-0001-7193-6082
Fredrik BoulundCentre for Translational Microbiome Research, Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Solna, Sweden.ORCID http://orcid.org/0000-0002-3806-323X
Fredrik O AnderssonDepartment of Chemical and Pharmaceutical Safety, Research Institutes of Sweden, Södertälje, Sweden.
Johan LindbergDepartment of Chemical and Pharmaceutical Safety, Research Institutes of Sweden, Södertälje, Sweden.
Ina Schuppe-KoistinenCentre for Translational Microbiome Research, Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Solna, Sweden.ORCID http://orcid.org/0000-0002-1423-3089
Ulf O GustafssonDepartment of Clinical Sciences, Danderyd Hospital, Karolinska Institutet, Stockholm, Sweden. ulf.o.gustafsson@regionstockholm.se.ORCID http://orcid.org/0000-0001-9549-061X
Lars EngstrandCentre for Translational Microbiome Research, Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Solna, Sweden. lars.engstrand@ki.se.ORCID http://orcid.org/0000-0002-7713-2373

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Our study explores signatures for Crohn's disease (CD) and Ulcerative Colitis (UC) reflecting an interplay between the intestinal microbiota, systemic inflammation, and plasma bile acid homeostasis. For this, 1,257 individuals scheduled for colonoscopy were included and completed a comprehensive questionnaire. Individuals with IBD ('CD' n = 64 and 'UC' n = 55), were age- and gender-matched to controls without findings during colonoscopy. Shotgun metagenomic profiles of the fecal microbiota and plasma profiles of inflammatory proteins and bile acids were used to build disease classifiers. Omics integration identified associations across datasets. B. hydrogenotrophica was associated with CD and C. eutactus, C. sp. CAG167, B. cellulosilyticus, C. mitsuokai with controls. Ten inflammation markers were increased in CD, and eleven bile acids and derivatives were decreased in CD, while 7a-Hydroxy-3-oxo-4-cholestenoate (7-HOCA) and chenodeoxycholic acid (CDCA) were increased compared to controls.In UC, commensals such as F. prausnitzii and A. muciniphila were depleted. CCL11, IL-17A, and TNF were increased in UC and associated to gut microbial changes. Correlations between taxa and bile acids were all positive. For both CD and UC, taxonomic differences were primarily characterized by a reduction in commensal gut microbes which exhibited positive correlations with secondary bile acids and negative correlations with inflammation markers.

Indexed as

Bile Acids and SaltsColitis, UlcerativeCrohn DiseaseGastrointestinal MicrobiomeInflammationAdultBiomarkersCase-Control StudiesFecesFemaleHumansMaleMiddle AgedBile Acids and SaltsBiomarkersCrohn’s diseaseInflammatory bowel diseaseMachine learningMicrobiomeOmicsUlcerative colitis

Identifiers

PMID41062543
PMCPMC12508173

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.