Evidence map›Paper›PMID 41062489›Full record

ArticleNature communications2025

Demethylation of methylguanidine by a stepwise dioxygenase and lyase reaction.

Malte Sinn, Dietmar Funck, Felix Gamer, Clemens Blumenthal, Cecilia Kramp, Jörg S Hartig

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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0 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Malte SinnDepartment of Chemistry, University of Konstanz, Konstanz, Germany. malte.sinn@uni-konstanz.de.ORCID http://orcid.org/0000-0002-3790-9686
Dietmar FunckDepartment of Chemistry, University of Konstanz, Konstanz, Germany.ORCID http://orcid.org/0000-0002-9855-0419
Felix GamerDepartment of Chemistry, University of Konstanz, Konstanz, Germany.ORCID http://orcid.org/0009-0002-0235-4905
Clemens BlumenthalDepartment of Chemistry, University of Konstanz, Konstanz, Germany.
Cecilia KrampDepartment of Chemistry, University of Konstanz, Konstanz, Germany.
Jörg S HartigDepartment of Chemistry, University of Konstanz, Konstanz, Germany. joerg.hartig@uni-konstanz.de.ORCID http://orcid.org/0000-0001-6601-7217

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Guanidine-responsive riboswitches control genes that enable either detoxification or assimilation of guanidino compounds. In Vreelandella boliviensis and other halophilic bacteria, genes encoding the guanidine carboxylase pathway are found in a guanidine riboswitch-regulated operon, along with two uncharacterized genes annotated as 2-oxoglutarate (2-OG/Fe(II))-dependent dioxygenase family protein and hypothetical protein, respectively. Here we show that the 2-OG/Fe(II)-dependent dioxygenase efficiently hydroxylates methylguanidine. The resulting N-(hydroxymethyl)guanidine constitutes an unexpectedly stable hemiaminal that slowly decays to guanidine and formaldehyde. The second protein strongly accelerates the fragmentation of N-(hydroxymethyl)guanidine into guanidine and formaldehyde, thus acting as N-(hydroxymethyl)guanidine lyase. Interestingly, the class II guanidine riboswitch in front of the guanidine carboxylase gene does not discriminate between guanidine and methylguanidine, whereas the guanidine class I riboswitch at the start of the entire operon is specific for guanidine. V. boliviensis exhibits growth in minimal media with either guanidine or methylguanidine as sole nitrogen source. Comparative proteome analysis revealed that the entire guanidine carboxylase operon is strongly expressed under these conditions. The presented study broadens our understanding of guanidine metabolism by describing two enzymatic activities that jointly catalyze the demethylation of methylguanidine.

Indexed as

DioxygenasesGuanidinesLyasesMethylococcaceaeBacterial ProteinsDemethylationGene Expression Regulation, BacterialGuanidineOperonRiboswitchBacterial ProteinsDioxygenasesGuanidineGuanidinesLyasesRiboswitch

Identifiers

PMID41062489
PMCPMC12508155

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.