Evidence map›Paper›PMID 41060256›Full record

ArticleInflammatory bowel diseases2026

Comparison of Different Sites of Microbiota Shows Increased Pseudomonas Species in the Gut Mucosa in Inflammatory Bowel Disease.

David Schult-Hannemann, Christina Gassner, Niklas Thur, Chiara Hennig, Lisa Fricke, Lucia Liotta, Simon Weidlich, Monica Steffi Matchado, Bärbel Stecher, Leona Arps and 13 more

Abstract readComparative Study
In one paragraph

Article in Inflammatory bowel diseases, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

David Schult-HannemannDepartment of Clinical Medicine, Clinical Department for Internal Medicine II, Technical University Munich (TUM) School of Medicine and Health, University Medical Center, Technical University Munich, Munich, Germany.ORCID 0000-0002-3022-799X
Christina GassnerDepartment of Clinical Medicine, Clinical Department for Internal Medicine II, Technical University Munich (TUM) School of Medicine and Health, University Medical Center, Technical University Munich, Munich, Germany.
Niklas ThurDepartment of Clinical Medicine, Clinical Department for Internal Medicine II, Technical University Munich (TUM) School of Medicine and Health, University Medical Center, Technical University Munich, Munich, Germany.
Chiara HennigDepartment of Clinical Medicine, Clinical Department for Internal Medicine II, Technical University Munich (TUM) School of Medicine and Health, University Medical Center, Technical University Munich, Munich, Germany.
Lisa FrickeDepartment of Clinical Medicine, Clinical Department for Internal Medicine II, Technical University Munich (TUM) School of Medicine and Health, University Medical Center, Technical University Munich, Munich, Germany.
Lucia LiottaDepartment of Clinical Medicine, Clinical Department for Internal Medicine II, Technical University Munich (TUM) School of Medicine and Health, University Medical Center, Technical University Munich, Munich, Germany.
Simon WeidlichDepartment of Clinical Medicine, Clinical Department for Internal Medicine II, Technical University Munich (TUM) School of Medicine and Health, University Medical Center, Technical University Munich, Munich, Germany.
Monica Steffi MatchadoMax-von-Pettenkofer Institute, Ludwig Maximilian University Munich, Munich, Germany.
Bärbel StecherMax-von-Pettenkofer Institute, Ludwig Maximilian University Munich, Munich, Germany.
Leona ArpsInstitute of Pathology, Technical University Munich, Munich, Germany.
Katja SteigerInstitute of Pathology, Technical University Munich, Munich, Germany.
Julius ShakhtourInstitute of Pathology, Technical University Munich, Munich, Germany.
Moritz JesinghausInstitute of Pathology, Technical University Munich, Munich, Germany.
Markus ListData Science in Systems Biology, TUM School of Life Sciences, Technical University Munich, Freising, Germany.
Klaus-Peter JanssenTUM School of Medicine and Health, Department of Surgery, University Medical Center, Technical University Munich, Munich, Germany.
Mohsen PourjamData Science in Systems Biology, TUM School of Life Sciences, Technical University Munich, Freising, Germany.
Klaus NeuhausCore Facility Microbiome, ZIEL-Institute for Food & Health, Technical University Munich, Freising, Germany.
Dirk HallerTUM School of Life Sciences, Chair of Nutrition and Immunology, Technical University Munich, Freising, Germany.ORCID 0000-0002-6977-4085
Roland M SchmidDepartment of Clinical Medicine, Clinical Department for Internal Medicine II, Technical University Munich (TUM) School of Medicine and Health, University Medical Center, Technical University Munich, Munich, Germany.
Michael QuanteDepartment of Clinical Medicine, Clinical Department for Internal Medicine II, Technical University Munich (TUM) School of Medicine and Health, University Medical Center, Technical University Munich, Munich, Germany.
Moritz MiddelhoffDepartment of Clinical Medicine, Clinical Department for Internal Medicine II, Technical University Munich (TUM) School of Medicine and Health, University Medical Center, Technical University Munich, Munich, Germany.
H Carlo MaurerDepartment of Clinical Medicine, Clinical Department for Internal Medicine II, Technical University Munich (TUM) School of Medicine and Health, University Medical Center, Technical University Munich, Munich, Germany.
ColoBAC Study Group (Collaborating Group)

Funding

Deutsche ForschungsgemeinschaftDeutsche Forschungsgemeinschaft 395357507DFGGerman Research Foundation 395357507German Research Foundation CRC 1371Microbiome Signatures
6 · The paper itself

Abstract

backgroundInflammatory bowel disease (IBD), including ulcerative colitis (UC) and Crohn's disease (CD), is associated with changes in the gut microbiome. Studies comparing fecal, gut mucosal, and salivary microbiomes are rare, and questions remain regarding the interaction of these compartments.

methodsIn this case-control study, 16S rRNA gene amplicon sequencing was performed on samples from stool, intestinal mucosa, and saliva of 120 patients with IBD. Patients with signs of non-IBD colonic inflammation (N = 28) and healthy subjects (N = 67) served as controls. A total of 480 16S profiles were analyzed. The results were evaluated with multiple clinical and pathological parameters and potential confounders were considered. The study aimed to find microbial biomarkers specific to IBD and signatures of intestinal barrier dysfunction.

resultsFecal α-diversity of IBD patients was reduced and Pseudomonas species was significantly increased in the mucosa of IBD patients (Pseudomonas-positive mucosa [PSM positive], P value < .001, Mann-Whitney U test). Comparison of matched stool and mucosa samples showed high abundance of Pseudomonas species in gut mucosa but not in fecal samples, especially in CD patients. Interestingly, in PSM positive, Paracoccus species, Bacteroides species, and Streptococcus species were more abundant. Importantly, the results were independent of disease severity, histopathology, medication, and other metadata.

conclusionsThe opportunistic pathogenic bacterium Pseudomonas species is more prevalent in the gut mucosa of patients with IBD. This indicates a disruption of the gut barrier with increasing mucosal colonization or invasion of the bacteria. The finding is independent of clinical metadata and confounders and occurs in new-onset IBD but not in non-IBD intestinal inflammation, which suggests disease specificity.

Indexed as

Colitis, UlcerativeCrohn DiseaseGastrointestinal MicrobiomeInflammatory Bowel DiseasesIntestinal MucosaPseudomonasSalivaAdultCase-Control StudiesFecesFemaleHumansMaleMiddle AgedRNA, Ribosomal, 16SYoung AdultRNA, Ribosomal, 16Sgut barrierinflammatory bowel diseasemicrobiomePseudomonas

Identifiers

PMID41060256
PMCPMC12857425

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.