Evidence map›Paper›PMID 41060028›Full record

ArticleJournal of virology2025

A structural roadmap for the formation of the coronavirus nsp3/nsp4 double membrane vesicle pore and its implications for polyprotein processing and replication/transcription.

Jason K Perry, Samuel Itskanov, John P Bilello, Eric B Lansdon

Abstract read
In one paragraph

Article in Journal of virology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jason K PerryStructural Biology & Chemistry, Gilead Sciences, Foster City, California, USA.ORCID 0000-0001-5492-0652
Samuel ItskanovStructural Biology & Chemistry, Gilead Sciences, Foster City, California, USA.ORCID 0000-0003-0705-2359
John P BilelloDiscovery Virology, Gilead Sciences, Foster City, California, USA.ORCID 0000-0003-4327-1727
Eric B LansdonStructural Biology & Chemistry, Gilead Sciences, Foster City, California, USA.ORCID 0000-0001-9461-1475

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Coronavirus replication is understood to occur within double membrane vesicles (DMVs) that arise during viral infection. Prior work has determined that these DMVs have characteristic pores formed from the non-structural viral proteins nsp3 and nsp4, which facilitate export of newly synthesized viral RNA. Yet how the replication machinery, which is comprised of the non-structural proteins nsp7 to nsp16, is recruited to the DMV remains a mystery. Working from AlphaFold and previously determined structures, we constructed a series of models that link formation of the DMV pore to nsp5 protease processing of the polyprotein and trapping of the cleaved products within the DMV itself. We argue that the initial pore is formed from 12 subunits of nsp3 and six subunits each of the intermediate uncleaved polyproteins pp1a' (nsp4-nsp10) and pp1ab' (nsp4-nsp16). Formation of this initial structure activates the protease function of alternating nsp5 subunits within a close-packed ring, facilitating the initial

Indexed as

CoronavirusPolyproteinsViral Nonstructural ProteinsVirus ReplicationHumansRNA, ViralTranscription, GeneticPolyproteinsRNA, ViralViral Nonstructural ProteinscoronavirusDMVnsp3nsp4nsp5replicase

Identifiers

PMID41060028
PMCPMC12645937

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.