Evidence map›Paper›PMID 41057617›Full record

ArticleNature plants2025

Ginger genome reveals the SMPED1 gene causing sex-phase synchrony and outcrossing in a flowering plant.

Jian-Li Zhao, Yang Dong, Ao-Dan Huang, Sheng-Chang Duan, Xiao-Chang Peng, Hong Liao, Jiang-Hua Chen, Yin-Ling Luo, Qin-Ying Lan, Ya-Li Wang and 10 more

Abstract read
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Article in Nature plants, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Balanced polymorphism in a floral transcription factor underlies the ancient rhythm of daily sex alternation in avocado.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Jian-Li Zhao *State Key Laboratory of Vegetation Structure, Function and Construction (VegLab), Ministry of Education Key Laboratory for Transboundary Ecosecurity of Southwest China, Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology, and Institute of Biodiversity, School of Ecology and Environmental Science, Yunnan University, Kunming, China. jianli.zhao@ynu.edu.cn.ORCID 0000-0002-5137-7735
Yang Dong *State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China.ORCID 0000-0001-6212-3055
Ao-Dan Huang *State Key Laboratory of Vegetation Structure, Function and Construction (VegLab), Ministry of Education Key Laboratory for Transboundary Ecosecurity of Southwest China, Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology, and Institute of Biodiversity, School of Ecology and Environmental Science, Yunnan University, Kunming, China.ORCID 0009-0002-7742-6539
Sheng-Chang Duan *State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China.ORCID 0000-0003-2728-8406
Xiao-Chang Peng *State Key Laboratory of Vegetation Structure, Function and Construction (VegLab), Ministry of Education Key Laboratory for Transboundary Ecosecurity of Southwest China, Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology, and Institute of Biodiversity, School of Ecology and Environmental Science, Yunnan University, Kunming, China.ORCID 0009-0008-9378-4700
Hong LiaoState Key Laboratory of Vegetation Structure, Function and Construction (VegLab), Ministry of Education Key Laboratory for Transboundary Ecosecurity of Southwest China, Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology, and Institute of Biodiversity, School of Ecology and Environmental Science, Yunnan University, Kunming, China.ORCID 0000-0001-8563-7374
Jiang-Hua ChenXishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, China.ORCID 0000-0003-0715-1859
Yin-Ling LuoKey Laboratory of Subtropical Medicinal Edible Resources Development and Utilization in Yunnan Province, College of Biology and Chemistry, Puer University, Puer, China.
Qin-Ying LanXishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, China.
Ya-Li WangState Key Laboratory of Vegetation Structure, Function and Construction (VegLab), Ministry of Education Key Laboratory for Transboundary Ecosecurity of Southwest China, Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology, and Institute of Biodiversity, School of Ecology and Environmental Science, Yunnan University, Kunming, China.
Wen-Jing WangState Key Laboratory of Vegetation Structure, Function and Construction (VegLab), Ministry of Education Key Laboratory for Transboundary Ecosecurity of Southwest China, Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology, and Institute of Biodiversity, School of Ecology and Environmental Science, Yunnan University, Kunming, China.
Xin-Meng ZhuState Key Laboratory of Vegetation Structure, Function and Construction (VegLab), Ministry of Education Key Laboratory for Transboundary Ecosecurity of Southwest China, Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology, and Institute of Biodiversity, School of Ecology and Environmental Science, Yunnan University, Kunming, China.
Pei-Wen LuoState Key Laboratory of Vegetation Structure, Function and Construction (VegLab), Ministry of Education Key Laboratory for Transboundary Ecosecurity of Southwest China, Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology, and Institute of Biodiversity, School of Ecology and Environmental Science, Yunnan University, Kunming, China.
Xue XiaState Key Laboratory of Vegetation Structure, Function and Construction (VegLab), Ministry of Education Key Laboratory for Transboundary Ecosecurity of Southwest China, Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology, and Institute of Biodiversity, School of Ecology and Environmental Science, Yunnan University, Kunming, China.
Bo LiState Key Laboratory of Vegetation Structure, Function and Construction (VegLab), Ministry of Education Key Laboratory for Transboundary Ecosecurity of Southwest China, Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology, and Institute of Biodiversity, School of Ecology and Environmental Science, Yunnan University, Kunming, China.
W John KressNational Museum of Natural History, Smithsonian Institution, Washington, DC, USA.ORCID 0000-0002-0140-5267
Jia-Jia HanState Key Laboratory of Vegetation Structure, Function and Construction (VegLab), Ministry of Education Key Laboratory for Transboundary Ecosecurity of Southwest China, Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology, and Institute of Biodiversity, School of Ecology and Environmental Science, Yunnan University, Kunming, China. hanjiajia@ynu.edu.cn.ORCID 0000-0002-3904-6642
Spencer C H BarrettDepartment of Ecology and Evolutionary Biology, University of Toronto, Toronto, Ontario, Canada. spencer.barrett@utoronto.ca.ORCID 0000-0002-7762-3455
Wei ChenState Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China. wchenntr@gmail.com.ORCID 0000-0002-6383-7540
Qing-Jun LiState Key Laboratory of Vegetation Structure, Function and Construction (VegLab), Ministry of Education Key Laboratory for Transboundary Ecosecurity of Southwest China, Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology, and Institute of Biodiversity, School of Ecology and Environmental Science, Yunnan University, Kunming, China.

Funding

National Natural Science Foundation of China (National Science Foundation of China) 41871047National Natural Science Foundation of China (National Science Foundation of China) U1602263
6 · The paper itself

Abstract

In many flowering plants, male and female reproductive organs mature at different times to avoid self-pollination, a phenomenon termed dichogamy. Most dichogamous species are either protandrous or protogynous, making this strategy difficult to study genetically. However, in the ginger Alpinia mutica, protandrous and protogynous floral morphs co-occur within populations, and the synchronized rhythmic movement of styles and dehiscence of stamens promotes cross-pollination between morphs. Here we demonstrate that a single Mendelian locus with a dominant allele governing protogyny controls sexual polymorphism. We used haplotype-resolved genomes and population genomics to identify the dichogamy-determining region, revealing a large deletion in the protandrous morphotype. We found that the key gene SMPED1, located adjacent to the deletion, governs the timing of anther dehiscence and style movement. SMPED1 is widespread among angiosperms and probably has conserved function. Our findings represent a new genetic characterization of a key mating system gene controlling the synchrony of sex organs in flowering plants.

Indexed as

Genes, PlantGenome, PlantPlant ProteinsZingiber officinaleFlowersPollinationPlant Proteins

Identifiers

PMID41057617

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.