Evidence map›Paper›PMID 41057608›Full record

ArticleNature cardiovascular research2025

Coronary artery disease-associated variants regulate vascular smooth muscle cell gene expression.

Nicolas Barbera, Lily Lei, Alexia Wallace, Faruk Erin, R Noah Perry, Hester M den Ruijter, Mete Civelek

Abstract read
In one paragraph

Article in Nature cardiovascular research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Nicolas BarberaDepartment of Genome Sciences, University of Virginia, Charlottesville, VA, USA.
Lily LeiDepartment of Genome Sciences, University of Virginia, Charlottesville, VA, USA.
Alexia WallaceDepartment of Genome Sciences, University of Virginia, Charlottesville, VA, USA.
Faruk ErinDepartment of Genome Sciences, University of Virginia, Charlottesville, VA, USA.
R Noah PerryDepartment of Genome Sciences, University of Virginia, Charlottesville, VA, USA.
Hester M den RuijterLaboratory of Experimental Cardiology, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands.
Mete CivelekDepartment of Genome Sciences, University of Virginia, Charlottesville, VA, USA. mcivelek@mednet.ucla.edu.ORCID http://orcid.org/0000-0002-8141-0284

Funding

BASIC CARDIOVASCULAR RESEARCH TRAINING GRANTT32HL007284 · NHLBI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Brant E Isakson, Gary K Owens · 1985 to 2026
$19.6M
Systems Genetics of Vascular Smooth Muscle PhenotypesR01HL166428 · NHLBI · UNIVERSITY OF VIRGINIA · PI Mete Civelek · 2023 to 2026
$2.4M
American Heart Association (American Heart Association, Inc.) 22POST000217181American Heart Association (American Heart Association, Inc.) 24EIA1258067American Heart Association-American Stroke Association 24EIA1258067Fondation Leducq 22CVD04NHLBI NIH HHS R01 HL166428NHLBI NIH HHS T32 HL007284U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01 R01HL156120
6 · The paper itself

Abstract

Genome-wide association studies have identified over 300 genomic loci associated with coronary artery disease (CAD) risk, but identifying functional variants remains challenging due to linkage disequilibrium. Here we show a comprehensive functional characterization of CAD-associated variants in primary vascular smooth muscle cells (SMCs). We performed lentivirus-based massively parallel reporter assays (lentiMPRAs) on 25,892 CAD-associated variants, testing their allele-specific enhancer activity in quiescent and proliferative SMCs. We identified 122 candidate variants with enhancer activity and allelic imbalance, including 23 variants showing condition-biased and 41 showing sex-biased effects. Integrating lentiMPRA with CUT&RUN epigenome profiling and expression quantitative trait loci data, we prioritized 49 functionally relevant variants. CRISPRi experiments on eight variants confirmed their regulatory effects on nine variant-gene pairs: rs35976034 (MAP1S), rs4888409 (CFDP1), rs73193808 (MAP3K7CL), rs67631072 (INPP5B/FHL3), rs1651285 (SNHG18), rs17293632 (SMAD3), rs2238792 (ARVCF) and rs4627080 (NRIP3). Our results fine-map the causal variants that confer CAD risk through their effects on vascular SMCs.

Indexed as

Coronary Artery DiseaseMuscle, Smooth, VascularMyocytes, Smooth MusclePolymorphism, Single NucleotideCell ProliferationCells, CulturedEnhancer Elements, GeneticFemaleGene Expression RegulationGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansMalePhenotypeQuantitative Trait Loci

Identifiers

PMID41057608
PMCPMC12711583

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.