Evidence map›Paper›PMID 41057332›Full record

ArticleNature communications2025

Human pancreatic α-cell heterogeneity and trajectory inference analyses reveal SMOC1 as a β-cell dedifferentiation gene.

Randy B Kang, Miguel Varela, Eunjin Oh, Jungeun Lee, Tuo Zhang, Esra Karakose, Andrew F Stewart, Donald K Scott, Debbie C Thurmond, Adolfo Garcia-Ocana and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Reuniting diabetes through the islet coordinate framework.The lancet. Diabetes & endocrinology · 2026
    Article
  6. Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Randy B KangDepartment of Molecular and Cellular Endocrinology, Arthur Riggs Diabetes and Metabolism Research Institute, Beckman Research Institute of City of Hope, Duarte, CA, 91010, USA.ORCID http://orcid.org/0000-0002-2541-4344
Miguel VarelaDepartment of Molecular and Cellular Endocrinology, Arthur Riggs Diabetes and Metabolism Research Institute, Beckman Research Institute of City of Hope, Duarte, CA, 91010, USA.
Eunjin OhDepartment of Molecular and Cellular Endocrinology, Arthur Riggs Diabetes and Metabolism Research Institute, Beckman Research Institute of City of Hope, Duarte, CA, 91010, USA.ORCID http://orcid.org/0009-0003-9437-0570
Jungeun LeeDepartment of Molecular and Cellular Endocrinology, Arthur Riggs Diabetes and Metabolism Research Institute, Beckman Research Institute of City of Hope, Duarte, CA, 91010, USA.
Tuo ZhangGenomics Resources Core Facility, Weill Cornell Medicine, New York, NY, 10065, USA.ORCID http://orcid.org/0000-0001-5396-918X
Esra KarakoseDiabetes, Obesity and Metabolism Institute, and Division of Endocrinology, Diabetes and Bone Diseases, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.ORCID http://orcid.org/0000-0002-6940-5909
Andrew F StewartDiabetes, Obesity and Metabolism Institute, and Division of Endocrinology, Diabetes and Bone Diseases, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Donald K ScottDiabetes, Obesity and Metabolism Institute, and Division of Endocrinology, Diabetes and Bone Diseases, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.ORCID http://orcid.org/0000-0002-1414-9223
Debbie C ThurmondDepartment of Molecular and Cellular Endocrinology, Arthur Riggs Diabetes and Metabolism Research Institute, Beckman Research Institute of City of Hope, Duarte, CA, 91010, USA.ORCID http://orcid.org/0000-0002-6303-4596
Adolfo Garcia-Ocana *Department of Molecular and Cellular Endocrinology, Arthur Riggs Diabetes and Metabolism Research Institute, Beckman Research Institute of City of Hope, Duarte, CA, 91010, USA. agarciaocana@coh.org.ORCID http://orcid.org/0000-0002-6883-6176
Geming Lu *Department of Molecular and Cellular Endocrinology, Arthur Riggs Diabetes and Metabolism Research Institute, Beckman Research Institute of City of Hope, Duarte, CA, 91010, USA. gelu@coh.org.ORCID http://orcid.org/0000-0002-1322-3997

Funding

Stable Isotope and Metabolomics CoreP60DK020541 · NIDDK · YESHIVA UNIVERSITY · PI PESSIN, JEFFREY E. · 1986 to 2014
$29.8M
Translational Research CoreP30DK020541 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI JEFFREY E. PESSIN · 2015 to 2026
$27.7M
Penn integrated Human Pancreas procurement and Analysis ProgramUC4DK112217 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI BETTS, MICHAEL R, FELDMAN, MICHAEL D · 2016 to 2020
$17.8M
Supplement to Integrated Program for Human Pancreas Procurement and AnalysisUC4DK112232 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI ATKINSON, MARK A., POWERS, ALVIN C · 2016 to 2020
$8.4M
Regulation of Glucose Homeostasis by Munc18 ProteinsR01DK067912 · NIDDK · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI THURMOND, DEBBIE C · 2004 to 2023
$6.5M
DYRK Inhibitors for Human Beta Cell ExpansionR01DK105015 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI DEVITA, ROBERT J, GARCIA-OCANA, ADOLFO · 2016 to 2024
$4.9M
Targeting PAK1 to improve functional beta-cell mass and insulin sensitivityR01DK102233 · NIDDK · INDIANA UNIVERSITY INDIANAPOLIS · PI THURMOND, DEBBIE C, VELUTHAKAL, RAJAKRISHNAN · 2014 to 2024
$3.3M
Biological and Medicinal Chemistry Approaches to Human Beta Cell RegenerationR01DK125285 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI DEVITA, ROBERT J, GARCIA-OCANA, ADOLFO · 2020 to 2023
$2.5M
Nrf2 and the expansion and preservation of beta cell massR01DK139631 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Maureen A Gannon, Adolfo Garcia-Ocana · 2024 to 2026
$2.2M
Myc Physiology in the Pancreatic Beta CellR01DK126450 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GARCIA-OCANA, ADOLFO, SCOTT, DONALD K. · 2020 to 2023
$2.0M
Epigenetic regulation in therapeutic human pancreatic beta cell proliferationK01DK128378 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KARAKOSE-BALIOGLU, ESRA · 2021 to 2024
$607k
NIDDK NIH HHS K01 DK128378NIDDK NIH HHS P30 DK020541NIDDK NIH HHS P60 DK020541NIDDK NIH HHS R01 DK067912NIDDK NIH HHS R01 DK102233NIDDK NIH HHS R01 DK105015NIDDK NIH HHS R01 DK125285NIDDK NIH HHS R01 DK126450NIDDK NIH HHS R01 DK139631NIDDK NIH HHS UC4 DK112217NIDDK NIH HHS UC4 DK112232U.S. Department of Health & Human Services | National Institutes of Health (NIH) K-01 DK128378
6 · The paper itself

Abstract

β-cell dysfunction and dedifferentiation towards an α-cell-like phenotype are hallmarks of type 2 diabetes. However, the cell subtypes involved in β-to-α-cell transition are unknown. Using single-cell and single-nucleus RNA-seq, RNA velocity, PAGA/cell trajectory inference, and gene commonality, we interrogated α-β-cell fate switching in human islets. We found five α-cell subclusters with distinct transcriptomes. PAGA analysis showed bifurcating cell trajectories in non-diabetic while unidirectional cell trajectories from β-to-α-cells in type 2 diabetes islets suggesting dedifferentiation towards α-cells. Ten genes comprised the common signature genes in trajectories towards α-cells. Among these, the α-cell gene SMOC1 was expressed in β-cells in type 2 diabetes. Enhanced SMOC1 expression in β-cells decreased insulin expression and secretion and increased β-cell dedifferentiation markers. Collectively, these studies reveal differences in α-β-cell trajectories in non-diabetes and type 2 diabetes human islets, identify signature genes for β-to-α-cell trajectories, and discover SMOC1 as an inducer of β-cell dysfunction and dedifferentiation.

Indexed as

Cell DedifferentiationDiabetes Mellitus, Type 2Glucagon-Secreting CellsInsulin-Secreting CellsGene Expression ProfilingHumansInsulinMaleSingle-Cell AnalysisTranscriptomeInsulin

Identifiers

PMID41057332
PMCPMC12504421

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.