Evidence map›Paper›PMID 41057289›Full record

ArticleJournal of separation science2025

Quantifying Biomolecular Interactions in High-Conductivity Samples With Capillary Electrophoresis.

Miyuru De Silva, Samson Aruna, Bhagya Samarakoon, Rebecca J Whelan

Abstract read
In one paragraph

Article in Journal of separation science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Miyuru De SilvaDepartment of Chemistry, University of Kansas, Lawrence, Kansas, USA.
Samson ArunaDepartment of Chemistry, University of Kansas, Lawrence, Kansas, USA.
Bhagya SamarakoonDepartment of Chemistry, University of Kansas, Lawrence, Kansas, USA.
Rebecca J WhelanDepartment of Chemistry, University of Kansas, Lawrence, Kansas, USA.

Funding

Understanding the mechanobiology of stem cells in a microengineered 3D cardiac tissue environment with cardiomyopathyP20GM103638 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI LUNTE, SUSAN M · 2012 to 2021
$22.1M
Using Integrated Omics to Identify Dysfunctional Genetic Mechanisms Influencing Schizophrenia and Sleep DisturbancesP20GM130423 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Kalyani Pyaram, Steven Allan Soper · 2019 to 2026
$21.5M
Women's Alzheimer's Risk Reduction in MidlifeP20GM152280 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI HEATHER R DESAIRE · 2024 to 2026
$10.0M
Synthetic Chemical Biology CoreP30GM145499 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI Susan M Lunte · 2022 to 2026
$6.9M
Targeted proteomics of MUC16 to enable early detection of ovarian cancer recurrenceR21CA267532 · NCI · UNIVERSITY OF NOTRE DAME · PI WHELAN, REBECCA JEAN · 2022 to 2023
$412k
NCI NIH HHS R21 CA267532NIGMS NIH HHS P20 GM103638NIGMS NIH HHS P20 GM130423NIGMS NIH HHS P20 GM152280NIGMS NIH HHS P30 GM145499
6 · The paper itself

Abstract

Capillary electrophoresis (CE) is a powerful tool for studying biomolecular interactions due to its high speed, low sample consumption, and adaptability. However, challenges arise when sample buffers possess higher conductivity than the background electrolyte (BGE), leading to peak distortions and reduced measurement accuracy in binding assays such as affinity probe CE and nonequilibrium CE of equilibrium mixtures. This study investigates these effects using a combination of simulation and experiment, focusing on aptamer-protein interactions. Moderate conductivity mismatches (e.g., sample buffer = 2 × tris glycine, BGE = 30 mM tricine) led to peak splitting artifacts, whereas large mismatches (e.g., sample buffer = phosphate-buffered saline, BGE = 30 mM tricine) produced broad, indistinct peaks, obscuring free and bound species. Simulations revealed that these artifacts arise from analyte ions trapped in high-conductivity sample plugs and are exacerbated by longer injection times. Experimental results confirmed that reducing plug length and selectively excluding artifact peaks during analysis improves quantification accuracy. When traditional separation fails under high-conductivity conditions, we propose an alternative method based on quantifying the "de-stacked" fraction of aptamers escaping the sample zone. This approach yielded values for the dissociation constant (K

Indexed as

Aptamers, NucleotideElectric ConductivityElectrophoresis, CapillaryHumansAptamers, Nucleotidealbuminaptamerconductivitysimulationthrombin

Identifiers

PMID41057289
PMCPMC12504146

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.