Evidence map›Paper›PMID 41057015›Full record

ReviewOpen biology2025

tRNA-modifying enzymes in bacterial stress adaptation.

Louna Fruchard, Claudia Salinas, Andre Carvalho, Zeynep Baharoglu

Abstract readReview
In one paragraph

Review in Open biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Compendium of RNA modifications for bacterial stress adaptation.Microbiology and molecular biology reviews : MMBR · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Louna FruchardEpitranscriptomic and Translational Responses to Antibacterial Stress Team, Expression Génétique Microbienne, CNRS UMR8261, Institut Pasteur, Université Paris Cité, Institut de Biologie Physico-Chimique, Paris, France.
Claudia SalinasEpitranscriptomic and Translational Responses to Antibacterial Stress Team, Expression Génétique Microbienne, CNRS UMR8261, Institut Pasteur, Université Paris Cité, Institut de Biologie Physico-Chimique, Paris, France.
Andre CarvalhoSorbonne Universite, Collège Doctoral, F-75005, Paris, France.
Zeynep BaharogluEpitranscriptomic and Translational Responses to Antibacterial Stress Team, Expression Génétique Microbienne, CNRS UMR8261, Institut Pasteur, Université Paris Cité, Institut de Biologie Physico-Chimique, Paris, France.ORCID 0000-0003-3477-2685

Funding

Agence Nationale de la RechercheAgence Nationale de la Recherche ANR STRATEX-IDEX REV UPC TOLERATEFondation pour la Recherche MédicaleInstitut des sciences biologiquesInstitut Pasteur
6 · The paper itself

Abstract

Transfer RNAs (tRNAs) and their modifications are central to bacterial translation and physiology, yet their roles in stress adaptation remain underexplored. While extensively studied in eukaryotes, and linked to diseases, bacterial tRNA modifications are only recently gaining attention. This review highlights emerging insights into how tRNA modifications and associated enzymes contribute to bacterial survival under oxidative and antibiotic stresses, both disrupting proteostasis. We examine the environmental and physiological stresses bacteria encounter, focussing on reactive oxygen species and sub-lethal antibiotic exposure. These stresses challenge proteome integrity and trigger adaptive responses involving key stress regulators. We explore the expanding field of bacterial epitranscriptomics, detailing the diversity, dynamics and structural impact of tRNA modifications, and how they influence selective translation. Central to this is the concept of modification tunable transcripts, linking specific codon usage patterns to stress-responsive translation reprogramming. Beyond their catalytic roles, tRNA-modifying enzymes also have additional functions. We discuss this dual functionality and its broader implications for bacterial adaptability. By integrating recent technological advances and conceptual models, this review underscores the potential of targeting tRNA modifications as a novel strategy to combat bacterial pathogenicity and antibiotic resistance. With many aspects still unresolved, the study of bacterial tRNA modifications promises rich opportunities for discovery and therapeutic innovation.

Indexed as

Adaptation, PhysiologicalBacteriaBacterial Physiological PhenomenaRNA, BacterialRNA Processing, Post-TranscriptionalRNA, TransferStress, PhysiologicalAnti-Bacterial AgentsGene Expression Regulation, BacterialOxidative StressAnti-Bacterial AgentsRNA, BacterialRNA, Transferantibiotic stressbacterial adaptive responsesbacterial stress responsesepitranscriptomicsmodification tunable transciptsoxidative stressselective translationtransfer RNAstRNA modificationstRNA-modifying enzymes

Identifiers

PMID41057015
PMCPMC12503941

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.