Evidence map›Paper›PMID 41056948›Full record

ArticleAmerican journal of human genetics2025

Distinguishing syndromic and nonsyndromic cleft palate through analysis of protein-altering de novo variants in 818 trios.

Kelsey R Robinson, Sarah W Curtis, Justin E Paschall, Wasiu Lanre Adeyemo, Terri H Beaty, Azeez Butali, Carmen J Buxó, David J Cutler, Michael P Epstein, Lord J J Gowans and 9 more

Abstract read
In one paragraph

Article in American journal of human genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Comprehensive analysis ofmedRxiv : the preprint server for health sciences · 2026
    Article
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors.

Kelsey R RobinsonDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA 30322, USA.
Sarah W CurtisDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA 30322, USA.
Justin E PaschallDepartment of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21218, USA.
Wasiu Lanre AdeyemoDepartment of Oral and Maxillofacial Surgery, College of Medicine, University of Lagos, Lagos 101017, Nigeria.
Terri H BeatyDepartment of Epidemiology, Johns Hopkins University, Baltimore, MD 21218, USA.
Azeez ButaliDepartment of Oral Biology, Radiology, and Medicine, University of Iowa, Iowa City, IA 52242, USA.
Carmen J BuxóSchool of Dental Medicine, University of Puerto Rico, San Juan, PR 00925, USA.
David J CutlerDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA 30322, USA.
Michael P EpsteinDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA 30322, USA.
Lord J J GowansDepartment of Biochemistry and Biotechnology, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana.
Jacqueline T HechtDepartment of Pediatrics, McGovern Medical School University of Texas Health at Houston, Houston, TX 77030, USA.
Gary M ShawDepartment of Pediatrics, Stanford University, Stanford, CA 94305, USA.
Lina Moreno UribeDepartment of Orthodontics and the Iowa Institute for Oral Health Research, University of Iowa, Iowa City, IA 52242, USA.
Jeffrey C MurrayDepartment of Pediatrics, University of Iowa, Iowa City, IA 52242, USA.
Harrison BrandCenter for Genomic Medicine, Massachusetts General Hospital, Boston, MA 02114, USA.
Seth M WeinbergDepartment of Oral and Craniofacial Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.
Mary L MarazitaDepartment of Oral and Craniofacial Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.
Kimberly F DohenyDepartment of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21218, USA.
Elizabeth J Leslie-ClarksonDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA 30322, USA. Electronic address: ejlesli@emory.edu.

Funding

Extending the Phenotype of Nonsyndromic Orofacial CleftsR01DE016148 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARAZITA, MARY L., WEINBERG, SETH M · 2004 to 2018
$19.7M
Tracking and Evaluation CoreU54GM133807 · NIGMS · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI LUCIANO, CARLOS A., MOROU-BERMUDEZ, EVANGELIA · 2020 to 2024
$17.7M
MOLECULAR STUDIES IN NONSYNDROMIC CLEFT LIP AND PALATER01DE011931 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI BLANTON, SUSAN HALLORAN, HECHT, JACQUELINE T · 1999 to 2017
$7.6M
Molecular Genetic Epidemiology of Cleft Lip and PalateR37DE008559 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 2004 to 2013
$6.8M
Whole Genome Sequencing for Orofacial Clefts, Incidental Findings and Role of Community GatekeepersR01DE028300 · NIDCR · UNIVERSITY OF IOWA · PI BUTALI, AZEEZ · 2020 to 2024
$3.9M
Integration of polygenic risk and facial morphometrics to decipher the genetic susceptibility of orofacial cleftingR01DE031261 · NIDCR · MASSACHUSETTS GENERAL HOSPITAL · PI Harrison Brand · 2022 to 2026
$3.8M
Genomics of Cleft PalateR01DE030342 · NIDCR · EMORY UNIVERSITY · PI ELIZABETH JANE LESLIE-CLARKSON · 2021 to 2026
$3.5M
Transfer 5R01DE027983 - Genomic and Functional Analysis of IRF6 Target Genes in Orofacial Cleft PathogenesisR01DE027983 · NIDCR · MASSACHUSETTS GENERAL HOSPITAL · PI LIAO, ERIC CHIEN-WEI · 2019 to 2023
$3.3M
Genomic Risk Variants in Orofacial Clefting: Discovery and Functional ValidationR01DE032319 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Mary L. Marazita, Ian Welsh · 2023 to 2026
$2.8M
Genetic modifiers of Van der Woude syndromeR01DE028342 · NIDCR · EMORY UNIVERSITY · PI LESLIE-CLARKSON, ELIZABETH JANE · 2019 to 2023
$2.7M
Functional analysis of ESRP1/2 and CTNND1 gene variants in orofacial cleftR01DE032332 · NIDCR · CHILDREN'S HOSP OF PHILADELPHIA · PI Eric Chien-Wei Liao · 2023 to 2026
$2.6M
Investigating the role of genes, maternal exposures, and interactions on orofacial cleftsR01DE032122 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SHAFFER, JOHN R · 2022 to 2024
$2.1M
NCBDD CDC HHS U01 DD001033NHLBI NIH HHS HHSN268201700006CNIDCR NIH HHS F31 DE032588NIDCR NIH HHS R00 DE024571NIDCR NIH HHS R01 DE008559NIDCR NIH HHS R01 DE011931NIDCR NIH HHS R01 DE016148NIDCR NIH HHS R01 DE027983NIDCR NIH HHS R01 DE028300NIDCR NIH HHS R01 DE028342NIDCR NIH HHS R01 DE030342NIDCR NIH HHS R01 DE031261NIDCR NIH HHS R01 DE032122NIDCR NIH HHS R01 DE032319NIDCR NIH HHS R01 DE032332NIDCR NIH HHS R37 DE008559NIGMS NIH HHS U54 GM133807
6 · The paper itself

Abstract

De novo variants (DNs) are sporadically occurring variants found in an offspring but absent in both parents. DNs most commonly arise in the germline and are not under selective pressure; therefore, they may be enriched for disease-causing alleles. In fact, DNs have been implicated in multiple rare genetic disorders. Cleft palate (CP) is a craniofacial congenital anomaly occurring in ∼1 in 1,700 live births. Genome-wide association studies have found fewer than a dozen CP-specific loci, while exome and targeted sequencing studies in family-based and case-control cohorts often lack statistical power to conclusively identify causal variants. We therefore hypothesized that CP probands would be enriched for protein-altering DNs, which may explain the relative dearth in discovery. A complicating factor in understanding CP, however, is its phenotypically heterogeneous nature. As such, we aggregated sequence data for 818 trios with CP representing a combination of subtypes and isolated and syndromic presentations. We identified global enrichment of protein-altering DNs (1.48, p = 1.28 × 10

Indexed as

Cleft PalateGenetic VariationExomeExome SequencingFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansMalePeptide Elongation FactorsPhenotypeRibonucleoprotein, U5 Small NuclearSyndromeTranscription FactorsEFTUD2 protein, humanPeptide Elongation FactorsRibonucleoprotein, U5 Small NuclearTranscription Factorscleft palatede novogenetic architecturephenotypic heterogeneityvariation

Identifiers

PMID41056948
PMCPMC12808955

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.