Evidence map›Paper›PMID 41055971›Full record

ArticleThe Journal of clinical investigation2025

The cell-type-specific genetic architecture of chronic pain in brain and dorsal root ganglia.

Sylvanus Toikumo, Marc Parisien, Michael J Leone, Chaitanya Srinivasan, Huasheng Yu, Asta Arendt-Tranholm, Úrzula Franco-Enzástiga, Christoph Hofstetter, Michele Curatolo, Wenqin Luo and 7 more

Abstract read
In one paragraph

Article in The Journal of clinical investigation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Sylvanus ToikumoMental Illness Research, Education and Clinical Center, Crescenz VAMC, Philadelphia, Pennsylvania, USA.
Marc ParisienAlan Edwards Centre for Research on Pain.
Michael J LeoneDepartment of Computational Biology, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.
Chaitanya SrinivasanDepartment of Computational Biology, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.
Huasheng YuDepartment of Neuroscience, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Asta Arendt-TranholmCenter for Advanced Pain Studies, Department of Neuroscience, University of Texas at Dallas, Richardson, Texas, USA.
Úrzula Franco-EnzástigaCenter for Advanced Pain Studies, Department of Neuroscience, University of Texas at Dallas, Richardson, Texas, USA.
Christoph HofstetterDepartment of Neurological Surgery, and.
Michele CuratoloDepartment of Anesthesiology and Pain Medicine, University of Washington, Seattle, Washington, USA.
Wenqin LuoDepartment of Neuroscience, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Andreas R PfenningDepartment of Computational Biology, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.
Rebecca P SealDepartment of Neurobiology.
Rachel L KemberMental Illness Research, Education and Clinical Center, Crescenz VAMC, Philadelphia, Pennsylvania, USA.
Theodore J PriceCenter for Advanced Pain Studies, Department of Neuroscience, University of Texas at Dallas, Richardson, Texas, USA.
Luda DiatchenkoAlan Edwards Centre for Research on Pain.
Stephen G WaxmanVeterans Affairs Connecticut Healthcare System, West Haven, Connecticut, USA.
Henry R KranzlerMental Illness Research, Education and Clinical Center, Crescenz VAMC, Philadelphia, Pennsylvania, USA.

Funding

Mechanistic underpinnings of chronic low back painU19NS130608 · NINDS · UNIVERSITY OF TEXAS DALLAS · PI Diana Tavares Ferreira · 2022 to 2026
$13.6M
The Penn Human Precision Pain Center (HPPC): Discovery and Functional Evaluation of Human Primary Somatosensory Neuron Types at Normal and Chronic Pain ConditionsU19NS135528 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI Mingyao Li, Wenqin Luo · 2023 to 2026
$11.2M
Radiochemistry CoreP30DA046345 · NIDA · UNIVERSITY OF PENNSYLVANIA · PI CARSON, RICHARD E. · 2019 to 2023
$9.4M
UW Core Center for Clinical Research of Musculoskeletal ConditionsP30AR072572 · NIAMS · UNIVERSITY OF WASHINGTON · PI Pradeep Suri · 2017 to 2026
$8.3M
Investigation of Mechanical Allodynia Circuitry by the Nature of the InjuryR01NS139529 · NINDS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI REBECCA P SEAL · 2025 to 2026
$1.2M
Characterizing the phenotypic spectrum associated with genetic liability for alcohol use disorderK01AA028292 · NIAAA · UNIVERSITY OF PENNSYLVANIA · PI KEMBER, RACHEL LORRAINE · 2021 to 2024
$505k
Cell-type specific molecular and functional analyses to target dorsal horn pain circuitry in mice and non-human primatesR56NS133364 · NINDS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI PFENNING, ANDREAS ROBERT, SEAL, REBECCA P · 2023 to 2023
$499k
Harnessing the genetics of chronic pain to inform the development of non-additive analgesic medicationsK99DA060906 · NIDA · UNIVERSITY OF PENNSYLVANIA · PI TOIKUMO, SYLVANUS · 2025 to 2025
$118k
Identifying and targeting neural subpopulations of the spinal cord that mediate chronic pain via cell-type-specific cis-regulatory elementsF31NS134318 · NINDS · CARNEGIE-MELLON UNIVERSITY · PI LEONE, MICHAEL · 2024 to 2025
$75k
BLRD VA I01 BX003341NIAAA NIH HHS K01 AA028292NIAMS NIH HHS P30 AR072572NIDA NIH HHS K99 DA060906NIDA NIH HHS P30 DA046345NINDS NIH HHS F31 NS134318NINDS NIH HHS R01 NS139529NINDS NIH HHS R56 NS133364NINDS NIH HHS U19 NS130608NINDS NIH HHS U19 NS135528RRD VA I50 RX002999
6 · The paper itself

Abstract

Chronic pain is a complex clinical problem comprising multiple conditions that may share a common genetic profile. GWAS have identified many risk loci whose cell-type context remains unclear. Here, we integrated GWAS data on chronic pain with single-cell RNA-Seq (scRNA-Seq) data from human brain and dorsal root ganglia (hDRG) and single-cell chromatin accessibility data from human brain and mouse dorsal horn. Pain-associated variants were enriched in glutamatergic neurons, mainly in the prefrontal cortex, hippocampal CA1-3, and amygdala. In hDRG, the hPEP.TRPV1/A1.2 neuronal subtype showed robust enrichment. Chromatin accessibility analyses revealed variant enrichment in excitatory and inhibitory neocortical neurons in the brain and in midventral neurons and oligodendrocyte precursor cells in the mouse dorsal horn. Gene-level heritability in the brain highlighted roles for kinase activity, GABAergic synapses, axon guidance, and neuron projection development. In hDRG, implicated genes were related to glutamatergic signaling and neuronal projection. In cervical DRG of patients with acute versus chronic pain, scRNA-Seq data from neuronal or non-neuronal cells were enriched for chronic pain-associated genes (e.g., EFNB2, GABBR1, NCAM1, SCN11A). This cell-type-specific genetic architecture of chronic pain across central and PNS circuits provides a foundation for targeted translational research.

Indexed as

BrainChronic PainGanglia, SpinalNeuronsAnimalsFemaleGenome-Wide Association StudyHumansMaleMiceSingle-Cell AnalysisCell biologyGeneticsGenetic variationMolecular pathologyNeurosciencePain

Identifiers

PMID41055971
PMCPMC12700546

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.