Evidence map›Paper›PMID 41052717›Full record

ArticleJournal of advanced research2026

Comprehensive genomic analysis and database construction for Apiales.

Yanhong Fu, Tong Yu, Xiao Ma, Zhuo Liu, Chunjin Li, Shaoqin Shen, Rong Zhou, Yingchao Zhang, Xiaoming Song

Abstract read
In one paragraph

Article in Journal of advanced research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Genome-Wide Characterization of theLife (Basel, Switzerland) · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yanhong FuSchool of Life Sciences/ School of Basic Medical Sciences/Library/Key Laboratory for Quality of Salt Alkali Resistant TCM of Hebei Administration of TCM, North China University of Science and Technology, Tangshan 063210, China.
Tong YuSchool of Life Sciences/ School of Basic Medical Sciences/Library/Key Laboratory for Quality of Salt Alkali Resistant TCM of Hebei Administration of TCM, North China University of Science and Technology, Tangshan 063210, China.
Xiao MaSchool of Life Sciences/ School of Basic Medical Sciences/Library/Key Laboratory for Quality of Salt Alkali Resistant TCM of Hebei Administration of TCM, North China University of Science and Technology, Tangshan 063210, China.
Zhuo LiuSchool of Life Sciences/ School of Basic Medical Sciences/Library/Key Laboratory for Quality of Salt Alkali Resistant TCM of Hebei Administration of TCM, North China University of Science and Technology, Tangshan 063210, China.
Chunjin LiSchool of Life Sciences/ School of Basic Medical Sciences/Library/Key Laboratory for Quality of Salt Alkali Resistant TCM of Hebei Administration of TCM, North China University of Science and Technology, Tangshan 063210, China.
Shaoqin ShenSchool of Life Sciences/ School of Basic Medical Sciences/Library/Key Laboratory for Quality of Salt Alkali Resistant TCM of Hebei Administration of TCM, North China University of Science and Technology, Tangshan 063210, China.
Rong ZhouCollege of Horticulture, Nanjing Agricultural University, Nanjing 210095, China; Department of Food Science, Aarhus University, Aarhus 8200, Denmark.
Yingchao ZhangSchool of Life Sciences/ School of Basic Medical Sciences/Library/Key Laboratory for Quality of Salt Alkali Resistant TCM of Hebei Administration of TCM, North China University of Science and Technology, Tangshan 063210, China.
Xiaoming SongSchool of Life Sciences/ School of Basic Medical Sciences/Library/Key Laboratory for Quality of Salt Alkali Resistant TCM of Hebei Administration of TCM, North China University of Science and Technology, Tangshan 063210, China; National Center of Technology Innovation for Comprehensive Utilization of Saline-Alkali Land, Dongying 257300, China. Electronic address: songxm@ncst.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionThe Apiales order harbors a rich variety of species, including vegetables, spices, and medicinal herbs, that possess diverse morphological characteristics and are globally distributed. Apiaceae and Araliaceae, being the two principal families within the Apiales order, have been the focus of extensive attention and research efforts on account of their significant value.

objectivesAlthough the species in Apiales are important and there is a large amount of genomic data available, there is currently a lack of large-scale genomic analysis and database platform at the Apiales order level. Therefore, this study aims to conduct a comprehensive genomic analysis and database construction for Apiales.

methodsThis study performed comprehensive comparative genomic analysis by bioinformatics methods. The database was constructed with MySQL database management, the Django framework, and multiple programming languages.

resultsThe present study was designed to clarify the phylogenetic associations and the phenomenon of paleo-polyploidization within Apiales species. Subsequently, an in-depth exploration was carried out to determine the ancestral karyotypes and to analyze the evolutionary pathways of chromosomes. In this research endeavor, genomic and transcriptomic data were employed to execute a comprehensive bioinformatic analysis. Eventually, through the integration of genomic data and bioinformatics findings, this study established the Apiales Genome Resources Database (TAGR), which is freely accessible at http://tagr.bio2db.com/index.html.

conclusionThe research project carried out a profound investigation into the genomic evolution and chromosomal karyotypes of Apiales species, unraveling their evolutionary history from a genomic perspective. In addition, this study established the TAGR, which will offer researchers convenient access to and efficient utilization of these omics data resources, facilitating genomic analysis and molecular breeding initiatives.

Indexed as

ApiaceaeDatabases, GeneticGenome, PlantGenomicsComputational BiologyPhylogenyApialesDatabase constructionEnrichment analysisKaryotype inferencePaleo-polyploidization

Identifiers

PMID41052717
PMCPMC13316506

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.