Evidence map›Paper›PMID 41049871›Full record

ArticleBiodiversity data journal2025

Progression of saproxylic fungal communities in fine woody debris in boreal forests of Oulanka, Finland, assessed by DNA metabarcoding.

Maria Shumskaya, Joel Lim, Sarah Apgar, Madhumitha Sadhasivan Gayathri, Adriana Inoa, Dmitry Schigel

Abstract read
In one paragraph

Article in Biodiversity data journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

6 authors.

Maria ShumskayaKean University, Union, United States of America Kean University Union United States of America.ORCID https://orcid.org/0000-0001-7916-462X
Joel LimKean University, Union, United States of America Kean University Union United States of America.ORCID https://orcid.org/0009-0008-2014-8594
Sarah ApgarKean University, Union, United States of America Kean University Union United States of America.
Madhumitha Sadhasivan GayathriKean University, Union, United States of America Kean University Union United States of America.
Adriana InoaKean University, Union, United States of America Kean University Union United States of America.
Dmitry SchigelUniversity of Helsinki, Helsinki, Finland University of Helsinki Helsinki Finland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: This publication presents a dataset of saproxylic (dead wood) fungi which addresses the limited understanding of saproxylic fungal diversity, community structure and colonisation dynamics in fine woody debris (FWD). This knowledge gap is largely due to the microscopic or cryptic nature of most fungal species, which often exist primarily as mycelium. To overcome this challenge, the study employs metabarcoding of DNA extracted from pins representing FWD which were experimentally placed for decomposition in northern Finland. The dataset can be used to investigate the composition and progression of fungal communities across different stages of wood decay. It includes communities from distinct biotopes: one forest site protected from reindeer grazing, one exposed to reindeer and a forest area frequented by tourists. The use of standardised decomposition experiments combined with high-throughput eDNA analysis represents a notable methodological approach in characterising saproxylic fungal communities. New information: The dataset was generated using the novel MycoPins method, published by the authors in 2023, in which sterilised wooden pins were embedded beneath the forest litter and left to decompose for one year, while being periodically inspected. This innovative decomposition experiment was conducted at the Oulanka Research Station in Kuusamo, Northern Finland. As the first study in this region to investigate saproxylic fungi in fine woody debris (FWD) using MycoPins and DNA metabarcoding, it adds new knowledge to the fungal biodiversity data of the region. The resulting dataset of DNA-derived occurrences has been published through the Global Biodiversity Information Facility (GBIF), offering valuable insights into fungal diversity across different stages of decomposition. Agaricomycetes, a class of fungi strongly associated with their hosts via ectomycorrhiza, was selected from the dataset for comparison with fungal datasets from neighbouring regions. Remarkably, the MycoPins method revealed a high proportion of unique Agaricomycetes taxa not captured in existing species checklists from GBIF.org. These findings highlight the study's contribution to advancing biodiversity assessment. The results demonstrate the potential of this approach to enhance our understanding of fungal community dynamics in boreal forest ecosystems.

Indexed as

boreal forestdead woodGBIFmetabarcodingMycoPinswood decomposition

Identifiers

PMID41049871
PMCPMC12491977

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.