Evidence map›Paper›PMID 41048389›Full record

ArticlePeerJ2025

Metagenomes and metagenome-assembled genomes from tidal lagoons at a New York City waterfront park.

Sally Kong, Eliana Abrams, Yehuda Binik, Christina Cappelli, Mathew Chu, Taiyo Cornett, Isayah Culbertson, Epifania Garcia, Jada Henry, Kristy Lam and 11 more

Abstract read
In one paragraph

Article in PeerJ, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Sally KongGenspace, Brooklyn, NY, United States of America.
Eliana AbramsGenspace, Brooklyn, NY, United States of America.
Yehuda BinikGenspace, Brooklyn, NY, United States of America.
Christina CappelliGenspace, Brooklyn, NY, United States of America.
Mathew ChuGenspace, Brooklyn, NY, United States of America.
Taiyo CornettGenspace, Brooklyn, NY, United States of America.
Isayah CulbertsonGenspace, Brooklyn, NY, United States of America.
Epifania GarciaGenspace, Brooklyn, NY, United States of America.
Jada HenryBillion Oyster Project, New York, NY, United States of America.
Kristy LamGenspace, Brooklyn, NY, United States of America.
D B LampmanGenspace, Brooklyn, NY, United States of America.
Grace MorenkoGenspace, Brooklyn, NY, United States of America.
Illusion RiveraBillion Oyster Project, New York, NY, United States of America.
Tanasia SwiftBillion Oyster Project, New York, NY, United States of America.
Isabella TorresBillion Oyster Project, New York, NY, United States of America.
Rayven VelezBillion Oyster Project, New York, NY, United States of America.
Elliot WaxmanGenspace, Brooklyn, NY, United States of America.
Serena WesselyGenspace, Brooklyn, NY, United States of America.
Anthony YuenGenspace, Brooklyn, NY, United States of America.
Casey K LardnerGenspace, Brooklyn, NY, United States of America.
J L WeissmanDepartment of Ecology & Evolution, State University of New York at Stony Brook, Stony Brook, NY, United States of America.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

New York City parks serve as potential sites of both social and physical climate resilience, but relatively little is known about how microbial organisms and processes contribute to the functioning of these deeply human-impacted ecosystems. We report the sequencing and analysis of 15 shotgun metagenomes, including the reconstruction of 129 high-quality metagenome-assembled genomes, from tidal lagoons and bay water at Bush Terminal Piers Park in Brooklyn, NY sampled from July to September 2024. Our metagenomic database for this site provides an important baseline for ongoing studies of the microbial communities of public parks and waterfront areas in NYC. In particular, we provide rich functional and taxonomic annotations that enable the use of these metagenomes and metagenome-assembled genomes for a wide variety of downstream applications.

Indexed as

MetagenomeParks, RecreationalSeawaterWater MicrobiologyHumansMetagenomicsMicrobiotaNew York CityMetagenomesMetagenomicsMicrobial EcologyPublic ParksUrban Ecology

Identifiers

PMID41048389
PMCPMC12493711

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.